View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10325_low_27 (Length: 240)
Name: NF10325_low_27
Description: NF10325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10325_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 5604381 - 5604454
Alignment:
| Q |
1 |
aaaatgatcttaataagacttatgtaaggactaaaacttaacattctttattttctaaagagacatatttaccg |
74 |
Q |
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| T |
5604381 |
aaaatgatctgaataagacttatgtaaggactaaaacttaacattctttattttctaaagagacatatttaccg |
5604454 |
T |
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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 5604492 - 5604604
Alignment:
| Q |
112 |
ctcatggaccccatgcatatatattattttgtttaatgtggtaannnnnnnnnnnaaagagaatgatggttaaaagttgttggaaaaacttgtttaaaga |
211 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
5604492 |
ctcatggaccccattcatatatattattttgttta-tgtggtaatttttttttt-aaagagaatcatggttaaaagttgttggaaaaacttgtttaatga |
5604589 |
T |
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| Q |
212 |
aaaacagatgatctt |
226 |
Q |
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||||||||||||||| |
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| T |
5604590 |
aaaacagatgatctt |
5604604 |
T |
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