View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10325_low_3 (Length: 636)
Name: NF10325_low_3
Description: NF10325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10325_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 12 - 622
Target Start/End: Complemental strand, 45830307 - 45829700
Alignment:
| Q |
12 |
gagcacagatatagtttatagtcattggttgactctaagcctctagtcattggttgcatagatatagtttatccaaggaaaaatgtaattcaaaattcag |
111 |
Q |
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||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
45830307 |
gagcacatatatagtttatagtcattggttgacactaagcctctagtcattggttgcatatatatagtttatctgaggaaaaatgtaattcaaaattcag |
45830208 |
T |
|
| Q |
112 |
agtcttttcttgtatgatttattgttgattatattcattcaagtgaaatattttaccagaaattctttatagtcaagaacacagtttccatctatgtcgg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| |
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| T |
45830207 |
agtcttttcttgtatgatttattgttgattatattcattcaagtgaaatattttaccataaattctttatagtcaagaacaccatttccatatatgtcgg |
45830108 |
T |
|
| Q |
212 |
cttggacccacgactcctttctcttcctcattcaacccatgaaaatggccaattaaattgagctgcaaagaattgaaataagnnnnnnnnncttataaac |
311 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45830107 |
cttggacccacaactcctttctcttcctcattcaacccatgagaatggccaattaaattgagctgcaaagaattgaaataagaaaaaaaa-cttataaac |
45830009 |
T |
|
| Q |
312 |
acatggattttcagataagcatgagcaataaatggtcttttagcgtgctgatggcacagttaatgctgcaacaaacctgtcgaagtgcttcacagaaccc |
411 |
Q |
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|| |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45830008 |
acgtggattttcagataagcatgtgcgctaaatggtcttttagcgtgctaatggcacagttaatgctgcaacaaacctgtcgaagtgcttcacagaaccc |
45829909 |
T |
|
| Q |
412 |
agaatacgtaatacaatcttcattatcggcccttagaaatgcaaatgcatcactttctctcagtgaagctctcctcaatagagactgaaaaaatagagaa |
511 |
Q |
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| T |
45829908 |
agaatatgtaatacaatcttcattatcggcccttagaaatgcaaatgcatcactttctgtcagtgaagctctcctcaat--agactgaaaaaatagagaa |
45829811 |
T |
|
| Q |
512 |
atttttgtcaacgtcgatttagttccatgaaactaaagaactaaagattgaaattcaatgagacatttcatcatacacataaaaagggaagaaattgaag |
611 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| |
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| T |
45829810 |
atttttgtcaatgtccatttagttccatgaaactaaagaactaaagattgaaattcaatgagacatttcatcaaacacataaaaggggaagatattgaag |
45829711 |
T |
|
| Q |
612 |
gtgaaaaactt |
622 |
Q |
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||||||||||| |
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| T |
45829710 |
gtgaaaaactt |
45829700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 97 - 550
Target Start/End: Original strand, 42557882 - 42558333
Alignment:
| Q |
97 |
taattcaaaattcagagtcttttcttgtatgatttattgttgattatattcattcaagtgaaatattttaccagaaattctttatagtcaagaacacagt |
196 |
Q |
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|||||||||||||||||||||||||||||| || ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
42557882 |
taattcaaaattcagagtcttttcttgtattatagattgttgtttatataatttcaagtgaaatactttaccagaaattctttatagtcaagaacaccat |
42557981 |
T |
|
| Q |
197 |
ttccatctatgtcggcttggacccacgactccttt--ctcttcctcattcaacccatgaaaatggccaattaaattgagctgcaaagaattgaaataagn |
294 |
Q |
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| T |
42557982 |
ttccatctatgtcagcttggacccacaactcctttatctcttcctcattcaactcatgagaatgaccaattaaattgagctgtaaagaattgaaaaaa-- |
42558079 |
T |
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| Q |
295 |
nnnnnnnncttataaacacatggatttt-cagataagcatgagcaataaatggtcttttagcgtgctgatggcacagttaatgctgcaacaaacctgtcg |
393 |
Q |
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||||||||||| |||||||| ||||| |||||| || ||||||||||||||||||||| || ||||||||||| ||||||||||||||||| |
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| T |
42558080 |
---aaaaccttataaacacgtggatttttcagatcagcatgtgcgttaaatggtcttttagcgtgctaatcgcacagttaatactgcaacaaacctgtcg |
42558176 |
T |
|
| Q |
394 |
aagtgcttcacagaacccagaatacgtaatacaatcttcattatcggcccttagaaatgcaaatgcatcactttctctcagtgaagctctcctcaataga |
493 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| |
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| T |
42558177 |
aagtgcttcacagaaaccagaatacgtaatacaatcttcattatcggcccttagaaatgcgaatgcatcactttctgtcagtgaagctcgcctcaataga |
42558276 |
T |
|
| Q |
494 |
gactgaaaaaatagagaaatttttgtcaacgtcgatttagttccatgaaactaaaga |
550 |
Q |
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| T |
42558277 |
tcctgaaaaaatagagaaaattttgtcaacgtcgatttagttccacgaaactaaaga |
42558333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 560 - 622
Target Start/End: Original strand, 22141304 - 22141366
Alignment:
| Q |
560 |
tgaaattcaatgagacatttcatcatacacataaaaagggaagaaattgaaggtgaaaaactt |
622 |
Q |
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||||||||||||||||||||||||| |||||||||| |||| |||| |||||||||||||||| |
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| T |
22141304 |
tgaaattcaatgagacatttcatcaaacacataaaaggggatgaaagtgaaggtgaaaaactt |
22141366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 393 - 483
Target Start/End: Complemental strand, 29160154 - 29160064
Alignment:
| Q |
393 |
gaagtgcttcacagaacccagaatacgtaatacaatcttcattatcggcccttagaaatgcaaatgcatcactttctctcagtgaagctct |
483 |
Q |
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||||||||| ||| || |||||||| |||||||||||||||| || ||| ||||||| |||||||||||||| ||| || | |||||||| |
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| T |
29160154 |
gaagtgctttacaaaaaccagaatatgtaatacaatcttcatcgtcagcctttagaaaagcaaatgcatcactctctgtctgcgaagctct |
29160064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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