View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10325_low_5 (Length: 437)
Name: NF10325_low_5
Description: NF10325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10325_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 11314284 - 11313877
Alignment:
| Q |
1 |
aaagcaagtaagctgttatggccgttaaaagtaatagagccgtacaagtttccattttttgaacacaccaaccaaacagtcttaaacttgttaactttga |
100 |
Q |
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| T |
11314284 |
aaagcaagtaagctgttatggccgttaaaagtaatagagccgtacaagtttccattttttgaacacaccaaccaaacagtcttaaacttgttaactttga |
11314185 |
T |
|
| Q |
101 |
cgtgcagtttaatgttgtcacacaacccaagaatcaaaagctcaaccctacaagaaaatttaatcaaaactttagtctttttacataattaaaaaatggg |
200 |
Q |
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| T |
11314184 |
tgtgcagtttaatgttgtcacacaacccaagaatcaaaagctcaaccctacaagaaaatttaatcaaaactttagtctttttacataattaaaaaatgag |
11314085 |
T |
|
| Q |
201 |
gtgataatattgtcacaacccaaaattcaaaagcttaaaactacaagataattcaatcaaaagtctaannnnnnnncattcataaaagnnnnnnnntgag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
11314084 |
gtgataatattgtcacaacccaaaattcaaaagcttaaaactacaagataattcaatcaaaagtctaattttttttcattcataaaagaaaaaaaatgag |
11313985 |
T |
|
| Q |
301 |
gtatagtataatgttataacaatccaagaatcaaaagctcaagcatacaagaaaatgaatggtaactagtaatgttttcaccccaataatcaaaatctca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11313984 |
gtatagtataatgttataacaatccaagaatcaaaagctcaagcatacaagaaaatgaatggtaactagtaatgttttcaccccaataatcaaaatctca |
11313885 |
T |
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| Q |
401 |
agcctaat |
408 |
Q |
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|||||||| |
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| T |
11313884 |
agcctaat |
11313877 |
T |
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