View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10325_low_9 (Length: 330)
Name: NF10325_low_9
Description: NF10325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10325_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 40904248 - 40904545
Alignment:
| Q |
18 |
acattcagcgagtacactgtggttcatgccggatgtgttgcaaagatcaaccctgatgcaccacttgacaaagtttgtattcttagttgtggaatatgca |
117 |
Q |
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| T |
40904248 |
acattcagcgagtacactgtggttcatgccggatgtgttgcaaagatcaaccctgatgcaccacttgacaaagtttgtattcttagctgtggaatatgca |
40904347 |
T |
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| Q |
118 |
caggtataggagattccagtgttttgatattaatatataactaggatgagtcgatgttttcctatttcaatttgcttccatacttctataggtcttggtg |
217 |
Q |
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| T |
40904348 |
caggtataggagattccagtgttttgatattaacatataactaggatgagtctatgttttcgtaattcaatttgcttccatacttctataggtcttggtg |
40904447 |
T |
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| Q |
218 |
ctactatcaatgttgctaaaccaaaacctggttcttctgtcgctatctttggacttggagctgttggccttgctgtgtgttactctcttatcttgtgt |
315 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
40904448 |
ctactatcaatgttgctaaaccaaaacccggttcttctgtcgctatctttggacttggagctgttggccttgctgtatgttactctcatatcttgtgt |
40904545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 40899682 - 40899967
Alignment:
| Q |
18 |
acattcagcgagtacactgtggttcatgccggatgtgttgcaaagatcaaccctgatgcaccacttgacaaagtttgtattcttagttgtggaatatgca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
40899682 |
acattcagcgagtacactgtggttcatgccggatgtgttgcaaagatcaaccctgatgcaccacttgacaaagtttgtattctcagctgtggaatatgca |
40899781 |
T |
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| Q |
118 |
caggtataggagattccagtgttttgatattaatatataactaggatgagtcgatgttttcctatttcaatttgcttccatacttctataggtcttggtg |
217 |
Q |
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| T |
40899782 |
caggtataggagattccaatgtttagatatttatatataattaggctgagtctatgtttctctaattcaatttgcttccatgcttttacaggtcttggtg |
40899881 |
T |
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| Q |
218 |
ctactatcaatgttgctaaaccaaaacctggttcttctgtcgctatctttggacttggagctgttggccttgctgtgtgttactct |
303 |
Q |
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||||||||||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||| || ||||||||| |
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| T |
40899882 |
ctactatcaatgtagctaaaccaaaacccggttcatctgttgctatctttggccttggagctgttgggcttgcggtatgttactct |
40899967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 40880748 - 40880871
Alignment:
| Q |
18 |
acattcagcgagtacactgtggttcatgccggatgtgttgcaaagatcaaccctgatgcaccacttgacaaagtttgtattcttagttgtggaatatgca |
117 |
Q |
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|||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||| |
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| T |
40880748 |
acattcagtgaatacactgtggttcatgctggatgtgttgcaaagatcaaccctgatgcacctcttgataaagtttgtattctcagctgtggaatatgca |
40880847 |
T |
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| Q |
118 |
caggtataggagattccagtgttt |
141 |
Q |
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| T |
40880848 |
caggtataggagattccaatgttt |
40880871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 143 - 301
Target Start/End: Original strand, 40881164 - 40881320
Alignment:
| Q |
143 |
gatattaatatataactaggatgagtcgatgttttcctatttcaatttgcttccatacttctataggtcttggtgctactatcaatgttgctaaaccaaa |
242 |
Q |
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|||||||||||||||||||| ||||| ||| ||||||| |||||||||| | ||| | || |||||||||||||||| ||||||||||||||||| || |
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| T |
40881164 |
gatattaatatataactaggttgagtatatgatttcctaattcaatttgcattcatggt-ct-taggtcttggtgctaccatcaatgttgctaaaccgaa |
40881261 |
T |
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| Q |
243 |
acctggttcttctgtcgctatctttggacttggagctgttggccttgctgtgtgttact |
301 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40881262 |
acccggttcttctgttgctatctttggacttggagctgttggccttgctgtatgttact |
40881320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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