View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10326_high_16 (Length: 246)
Name: NF10326_high_16
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10326_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 6745494 - 6745721
Alignment:
| Q |
1 |
ttcgacatctaagttcaatcaccaattcattattgataaccggtgaagatgcaattgtaattttcaatgtatagggaagtatttcgtaacttatattaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
6745494 |
ttcgacatctaagttcaatcaccaattcattattgataaccggtgaagatgcaattgtaattttcaaagtatagggaagtatttcgtaacttataataat |
6745593 |
T |
|
| Q |
101 |
taatgtttaatggtaatacaaggtctattctcatttttgttaatttcggttggttaggttcgaatattnnnnnnnntggtaatacaattgtttaccatga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | || | ||||||||||||| |||||||||| |
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| T |
6745594 |
taatgtttaatggtaatacaaggtctattctcatttttgtcaatttcggttggttaggtttgcttaataaaaaaaatggtaatacaattttttaccatga |
6745693 |
T |
|
| Q |
201 |
cttatttaacatcaataaaaatatatat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
6745694 |
cttatttaacatcaataaaaatatatat |
6745721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 27070735 - 27070785
Alignment:
| Q |
177 |
tggtaatacaattgtttaccatgacttatttaacatcaataaaaatatata |
227 |
Q |
| |
|
||||||||||||| | | | |||||||||||||||||||| |||||||||| |
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|
| T |
27070735 |
tggtaatacaattttgtcctatgacttatttaacatcaatgaaaatatata |
27070785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 27150821 - 27150871
Alignment:
| Q |
177 |
tggtaatacaattgtttaccatgacttatttaacatcaataaaaatatata |
227 |
Q |
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|
| T |
27150821 |
tggtaatacaattttgtcctatgacttatttaacatcaatgaaaatatata |
27150871 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 9490141 - 9490375
Alignment:
| Q |
1 |
ttcgacatctaagttcaatcaccaattcattattgataaccggtgaagatgcaattgtaattttcaatgt-----atagggaagtatttcgtaacttata |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9490141 |
ttcgacatctaagttcaatcaccaattcattattgataatcggtgaagatgcaattgtaattttcaatgtggtctatagggaagtatttcgtaacttata |
9490240 |
T |
|
| Q |
96 |
ttaattaatgtttaatggtaatacaaggtctattctcatttttgttaatttcggttggttaggttcgaatattnnnnnnnntggtaatacaattgtttac |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||||||||||| ||||| |
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| T |
9490241 |
ataattaatgtttaatggtaatacaaggtctattctcatttttgtcaatttcggttggttaggttcgcttctt-aaaaaaatggtaatacaattttttac |
9490339 |
T |
|
| Q |
196 |
catgacttatttaacatcaataaaaatatatatgtc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
9490340 |
catgacttatttaacatcaataaaaatatatatgtc |
9490375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 4434898 - 4435132
Alignment:
| Q |
1 |
ttcgacatctaagttcaatcaccaattcattattgataaccggtgaagatgcaattgtaattttcaatgt-----atagggaagtatttcgtaacttata |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
4434898 |
ttcgacatctaagttcaatcaccaattcattattgataattggtgaagatgcaattgtaattttcaatgtcgtctataggaaagtatttcgtaacttata |
4434997 |
T |
|
| Q |
96 |
ttaattaatgtttaatggtaatacaaggtctattctcatttttgttaatttcggttggttaggttcgaatattnnnnnnnntggtaatacaattgtttac |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | || ||||||||||||| ||||| |
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| T |
4434998 |
ataattaatgtttaatggtaatacaaggtctattttcatttttgtcaatttcggttggttaggttcgcttctt-aaaaaaatggtaatacaattttttac |
4435096 |
T |
|
| Q |
196 |
catgacttatttaacatcaataaaaatatatatgtc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
4435097 |
catgacttatttaacatcaataaaaatatatatgtc |
4435132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 227
Target Start/End: Complemental strand, 15515394 - 15515344
Alignment:
| Q |
177 |
tggtaatacaattgtttaccatgacttatttaacatcaataaaaatatata |
227 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||||||||||||||||||| |
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|
| T |
15515394 |
tggtaatacaattttttgctatgacttatttaacatcaataaaaatatata |
15515344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 15840360 - 15840410
Alignment:
| Q |
177 |
tggtaatacaattgtttaccatgacttatttaacatcaataaaaatatata |
227 |
Q |
| |
|
||||||||||||| ||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
15840360 |
tggtaatacaattttttgctatgacttatttaacatcaataaaaatatata |
15840410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 15846417 - 15846466
Alignment:
| Q |
178 |
ggtaatacaattgtttaccatgacttatttaacatcaataaaaatatata |
227 |
Q |
| |
|
|||||||||||| ||| | |||| ||||||||||||||| |||||||||| |
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|
| T |
15846417 |
ggtaatacaattttttgctatgatttatttaacatcaatcaaaatatata |
15846466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 15855627 - 15855676
Alignment:
| Q |
178 |
ggtaatacaattgtttaccatgacttatttaacatcaataaaaatatata |
227 |
Q |
| |
|
|||||||||||| ||| | |||| ||||||||||||||| |||||||||| |
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|
| T |
15855627 |
ggtaatacaattttttgctatgatttatttaacatcaatcaaaatatata |
15855676 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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