View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10326_high_17 (Length: 242)

Name: NF10326_high_17
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10326_high_17
NF10326_high_17
[»] chr6 (2 HSPs)
chr6 (7-223)||(33943193-33943407)
chr6 (92-200)||(9093574-9093681)
[»] chr4 (6 HSPs)
chr4 (7-169)||(17822797-17822959)
chr4 (132-197)||(18425761-18425825)
chr4 (78-178)||(55414424-55414523)
chr4 (133-200)||(41336706-41336772)
chr4 (132-201)||(3155547-3155616)
chr4 (7-71)||(55437150-55437214)
[»] chr5 (5 HSPs)
chr5 (141-200)||(35446000-35446059)
chr5 (81-201)||(4014431-4014550)
chr5 (7-39)||(34907721-34907753)
chr5 (78-113)||(40426796-40426831)
chr5 (81-169)||(39105440-39105527)
[»] chr7 (1 HSPs)
chr7 (79-184)||(40252112-40252216)
[»] chr8 (5 HSPs)
chr8 (7-59)||(1096576-1096628)
chr8 (78-161)||(30251458-30251540)
chr8 (7-57)||(38750445-38750495)
chr8 (82-183)||(18930664-18930764)
chr8 (158-195)||(31716314-31716351)
[»] chr1 (1 HSPs)
chr1 (78-178)||(24915055-24915154)
[»] chr3 (4 HSPs)
chr3 (16-55)||(11592027-11592066)
chr3 (7-39)||(9832687-9832719)
chr3 (7-59)||(25447177-25447229)
chr3 (4-32)||(40294795-40294823)
[»] chr2 (4 HSPs)
chr2 (80-178)||(12464479-12464576)
chr2 (78-200)||(45229457-45229577)
chr2 (84-200)||(33319822-33319938)
chr2 (81-185)||(3611186-3611289)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 33943407 - 33943193
Alignment:
Q  7 ttatttgagtttatttattgacataagttttgtaagattatttgaaagaacatttgataacaactaagatgtttttcataagcttttttaagcttatttt 106  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  33943407 ttatttaagtttatttattgacataagttttgtaagattatttgaaagaacatttgaaaacaactaagatgtttttcataagcttttctaagcttatttt 33943308  T
Q  107 cttaagtactctaaggtaacttatcgaaaacagtttataacgtgtacaataacaatttaactttaatttatcatttgctcttaaaatagcttatatattg 206  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  33943307 cttaagtaatctaaggtaacttatcgaaaacagtttataacatgtacaataacaatttaactttaatttatcatttgctcttaaaatagctt--atattg 33943210  T
Q  207 cttttacttaagcgctt 223  Q
    |||||||||||||||||    
T  33943209 cttttacttaagcgctt 33943193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 9093574 - 9093681
Alignment:
Q  92 ttttaagcttattttcttaagtactctaaggtaacttatcgaaaacagtttataacgtgtacaataacaatttaactttaatttatcatttgctcttaaa 191  Q
    |||| ||||||||||||||||| |||||||  | ||||| |||||||| ||||| | | ||| | ||||||||||||||| |||||| |||| | |  ||    
T  9093574 ttttcagcttattttcttaagttctctaagacagcttat-gaaaacagcttatagcttatacgaaaacaatttaactttattttatcttttgatatagaa 9093672  T
Q  192 atagcttat 200  Q
    |||||||||    
T  9093673 atagcttat 9093681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 169
Target Start/End: Original strand, 17822797 - 17822959
Alignment:
Q  7 ttatttgagtttatttattgacataagttttgtaagattatttgaaagaacatttgataacaactaa-gatgtttttcataagcttttttaagcttattt 105  Q
    ||||||||| |||| || ||||||||||| ||| ||| |||||   ||||||| ||| |||| || | ||  |||||||||||||||||| |||||||||    
T  17822797 ttatttgagcttatctactgacataagttctgtgagactatttaggagaacatatgaaaacagcttatgacatttttcataagctttttttagcttattt 17822896  T
Q  106 tcttaagtactctaaggtaacttatcgaaaacagtttataacgtgtacaataacaatttaactt 169  Q
    || ||||| ||| ||| || ||||| |||||||  ||||| | | || ||||||||||||||||    
T  17822897 tcataagttctccaagatagcttat-gaaaacaacttatagcatataaaataacaatttaactt 17822959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 18425825 - 18425761
Alignment:
Q  132 gaaaacagtttataacgtgtacaataacaatttaactttaatttatcatttgctcttaaaatagct 197  Q
    ||||||| |||||||| ||||||| ||||||||||||||| |||| ||||||| | ||||||||||    
T  18425825 gaaaacattttataacatgtacaaaaacaatttaactttattttaccatttgc-cataaaatagct 18425761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 55414424 - 55414523
Alignment:
Q  78 tttttcataagcttttttaagcttattttcttaagtactctaaggtaacttatcgaaaacagtttataacgtgtacaataacaatttaactttaatttat 177  Q
    |||||||||||||||||| | ||||||||| ||||| ||| ||| |||||||| ||||||| |||||| | | | ||| || || ||||||||| |||||    
T  55414424 tttttcataagcttttttcaacttattttcataagttctccaagataacttat-gaaaacaatttatagcatatgcaaaaaaaaattaactttattttat 55414522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 41336772 - 41336706
Alignment:
Q  133 aaaacagtttataacgtgtacaataacaatttaactttaatttatcatttgctcttaaaatagcttat 200  Q
    |||||| |||||||| | ||||| ||||||||||||||| |||||| |||||| | ||||||||||||    
T  41336772 aaaacaatttataacatatacaaaaacaatttaactttattttatc-tttgctataaaaatagcttat 41336706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 3155616 - 3155547
Alignment:
Q  132 gaaaacagtttataacgtgtacaataacaatttaactttaatttatcatttgctcttaaaatagcttata 201  Q
    |||||||| || || | ||||||| ||||||||||||||| |||||| |||||| |  ||||||||||||    
T  3155616 gaaaacagcttgtagcttgtacaaaaacaatttaactttattttatcttttgctatagaaatagcttata 3155547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 55437214 - 55437150
Alignment:
Q  7 ttatttgagtttatttattgacataagttttgtaagattatttgaaagaacatttgataacaact 71  Q
    |||||||||||||| || || |||||||||||| | ||| ||||||||||| | ||| |||||||    
T  55437214 ttatttgagtttatctactgccataagttttgtgaaattgtttgaaagaacttatgaaaacaact 55437150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Complemental strand, 35446059 - 35446000
Alignment:
Q  141 ttataacgtgtacaataacaatttaactttaatttatcatttgctcttaaaatagcttat 200  Q
    ||||| ||| ||||| ||||||||||||||| ||||||||||||| | ||||||||||||    
T  35446059 ttatagcgtatacaaaaacaatttaactttattttatcatttgctataaaaatagcttat 35446000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 201
Target Start/End: Original strand, 4014431 - 4014550
Alignment:
Q  81 ttcataagcttttttaagcttattttcttaagtactctaaggtaacttatcgaaaacagtttataacgtgtacaataacaatttaactttaatttatcat 180  Q
    |||||||||| |||| ||||||||||| ||||| ||| ||| || ||||| |||||||| |||| |  | | ||| |||||| |||||||| |||||| |    
T  4014431 ttcataagctgttttcagcttattttcataagttctccaagatagcttat-gaaaacagcttatcatttttccaaaaacaatctaactttattttatctt 4014529  T
Q  181 ttgctcttaaaatagcttata 201  Q
    ||||| |  ||||||||||||    
T  4014530 ttgctatagaaatagcttata 4014550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 34907721 - 34907753
Alignment:
Q  7 ttatttgagtttatttattgacataagttttgt 39  Q
    |||||||||||||||||||||||||||||||||    
T  34907721 ttatttgagtttatttattgacataagttttgt 34907753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 40426831 - 40426796
Alignment:
Q  78 tttttcataagcttttttaagcttattttcttaagt 113  Q
    |||||||||||||||||||||||||||||| |||||    
T  40426831 tttttcataagcttttttaagcttattttcgtaagt 40426796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 39105527 - 39105440
Alignment:
Q  81 ttcataagcttttttaagcttattttcttaagtactctaaggtaacttatcgaaaacagtttataacgtgtacaataacaatttaactt 169  Q
    |||||||||| |||| ||||||||||| ||||| ||| ||| || ||||| |||||||| ||||| | | ||| | |||||||||||||    
T  39105527 ttcataagctatttttagcttattttcataagttctccaagatagcttat-gaaaacagattatagcttatacgaaaacaatttaactt 39105440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 184
Target Start/End: Original strand, 40252112 - 40252216
Alignment:
Q  79 ttttcataagcttttttaagcttattttcttaagtactctaaggtaacttatcgaaaacagtttataacgtgtacaataacaatttaactttaatttatc 178  Q
    ||||| ||||||| | | ||||||||||| ||||| ||| ||| |||||||| ||||| || ||||||| | ||||| ||| ||||||||||  ||||||    
T  40252112 ttttcgtaagcttctatcagcttattttcataagttctccaagataacttat-gaaaagagcttataacatatacaaaaacgatttaactttgttttatc 40252210  T
Q  179 atttgc 184  Q
    ||||||    
T  40252211 atttgc 40252216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 1096628 - 1096576
Alignment:
Q  7 ttatttgagtttatttattgacataagttttgtaagattatttgaaagaacat 59  Q
    ||||||||||||||||| ||||||||||||||| ||||| ||||  |||||||    
T  1096628 ttatttgagtttatttagtgacataagttttgtgagattttttgggagaacat 1096576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 161
Target Start/End: Original strand, 30251458 - 30251540
Alignment:
Q  78 tttttcataagcttttttaagcttattttcttaagtactctaaggtaacttatcgaaaacagtttataacgtgtacaataacaa 161  Q
    |||||||||||||||||  ||||||||||| |||||  || ||| || ||||| |||||||| ||||||| | |||||||||||    
T  30251458 tttttcataagctttttacagcttattttcataagtggtccaagatagcttat-gaaaacagcttataacatatacaataacaa 30251540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 38750495 - 38750445
Alignment:
Q  7 ttatttgagtttatttattgacataagttttgtaagattatttgaaagaac 57  Q
    |||||||||||||| || |  |||||||||||| |||||||||||||||||    
T  38750495 ttatttgagtttatctacttgcataagttttgtgagattatttgaaagaac 38750445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 18930764 - 18930664
Alignment:
Q  82 tcataagcttttttaagcttattttcttaagtactctaaggtaacttatcgaaaacagtttataacgtgtacaataacaatttaactttaatttatcatt 181  Q
    ||||||||| |||| | |||||| || ||||| ||| ||| || ||||| |||| ||||||| | | | |||||||||||||||||||| ||||||| ||    
T  18930764 tcataagctgttttcatcttattctcataagttctcgaagatagcttattgaaa-cagtttacagcatatacaataacaatttaactttcatttatcttt 18930666  T
Q  182 tg 183  Q
    ||    
T  18930665 tg 18930664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 31716314 - 31716351
Alignment:
Q  158 acaatttaactttaatttatcatttgctcttaaaatag 195  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  31716314 acaatttaactttattttatcatttgctgttaaaatag 31716351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 24915055 - 24915154
Alignment:
Q  78 tttttcataagcttttttaagcttattttcttaagtactctaaggtaacttatcgaaaacagtttataacgtgtacaataacaatttaactttaatttat 177  Q
    |||||||||||||||||| | |||||||||  |||| ||| |||  | ||||| |||||||| ||||| | | ||||| ||||||||||||||| |||||    
T  24915055 tttttcataagcttttttcaacttattttcacaagttctccaagacagcttat-gaaaacagcttatagcatatacaaaaacaatttaactttattttat 24915153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 11592066 - 11592027
Alignment:
Q  16 tttatttattgacataagttttgtaagattatttgaaaga 55  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  11592066 tttatttattgacataagttttgtaagactatttaaaaga 11592027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 9832687 - 9832719
Alignment:
Q  7 ttatttgagtttatttattgacataagttttgt 39  Q
    ||||||||| |||||||||||||||||||||||    
T  9832687 ttatttgagcttatttattgacataagttttgt 9832719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 25447177 - 25447229
Alignment:
Q  7 ttatttgagtttatttattgacataagttttgtaagattatttgaaagaacat 59  Q
    |||||||||||||| || ||||||||||||||| ||| | |||| ||||||||    
T  25447177 ttatttgagtttatctactgacataagttttgtgagactgtttgcaagaacat 25447229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 40294823 - 40294795
Alignment:
Q  4 gatttatttgagtttatttattgacataa 32  Q
    |||||||||||||||||||||||||||||    
T  40294823 gatttatttgagtttatttattgacataa 40294795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 12464479 - 12464576
Alignment:
Q  80 tttcataagcttttttaagcttattttcttaagtactctaaggtaacttatcgaaaacagtttataacgtgtacaataacaatttaactttaatttatc 178  Q
    ||||| |||||||||| |||||||||||  |||| ||| ||| || ||||| ||||| || ||||| | | ||||| ||||||||||||||| ||||||    
T  12464479 tttcacaagcttttttcagcttattttcacaagttctccaagatagcttat-gaaaatagcttatagcatatacaaaaacaatttaactttattttatc 12464576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 45229577 - 45229457
Alignment:
Q  78 tttttcataagcttttttaagcttattttcttaagtactctaaggtaacttatcgaaaacagtttataacgtgtacaataacaatttaactttaatttat 177  Q
    |||||||| ||||||||| ||||||||||| ||||| ||| ||| || ||||| |||||||  | ||||| | ||||| ||||||||||| | | |||||    
T  45229577 tttttcattagcttttttcagcttattttcataagttctcgaagatagcttat-gaaaaca-atgataacatatacaaaaacaatttaacctcattttat 45229480  T
Q  178 catttgctcttaaaatagcttat 200  Q
    | |||||| |  |||||||||||    
T  45229479 cgtttgctatagaaatagcttat 45229457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 33319822 - 33319938
Alignment:
Q  84 ataagcttttttaagcttattttcttaagtactctaaggtaacttatcgaaaacagtttataacgtgtacaataacaatttaactttaat-ttatcattt 182  Q
    |||||||||||| ||||||||||| ||||| ||| ||| ||  |||| ||||||||||||||   | ||||| |||| ||||||||| || |||||||||    
T  33319822 ataagcttttttcagcttattttcataagttctccaagatagtttat-gaaaacagtttatagtatatacaaaaacagtttaacttttatgttatcattt 33319920  T
Q  183 gctcttaaaatagcttat 200  Q
     || | ||||||| ||||    
T  33319921 actataaaaatagtttat 33319938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 185
Target Start/End: Complemental strand, 3611289 - 3611186
Alignment:
Q  81 ttcataagcttttttaagcttattttcttaagtactctaaggtaacttatcgaaaacagtttataacgtgtacaataacaatttaactttaatttatcat 180  Q
    ||||||| || |||| ||||||||||| ||||| ||| ||| || ||| | ||||||||| |||||  | ||||| ||||||||||||||| |||| | |    
T  3611289 ttcataaactgtttttagcttattttcataagttctccaagatagcttgt-gaaaacagtctataaactatacaaaaacaatttaactttattttacctt 3611191  T
Q  181 ttgct 185  Q
    |||||    
T  3611190 ttgct 3611186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University