View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10326_high_22 (Length: 226)
Name: NF10326_high_22
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10326_high_22 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 4576074 - 4575852
Alignment:
| Q |
1 |
tactattactgaagaaattataacaaaattaccagttactgatgaaaaagatgaagaggaaaataatttgtctatttcatcaattggatttttgaagcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4576074 |
tactattactgaagaaattataacaaaattacctgttactgatgaaaaagatgaagaggaaaataatttgtgtatttcatcaattggatttttgaag--- |
4575978 |
T |
|
| Q |
101 |
aagaagaagcttattgttcttgatttaaatggacttcttgctgatattgtttcttcacatccaaaggaggttacaccagatgcaaccatagccaggaact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4575977 |
aagaagaagcttattgttcttgatttaaatggacttcttgctgatattgtttcttcacatccaaaggaggttacaccagatgcaaccatagccaggaact |
4575878 |
T |
|
| Q |
201 |
catgtaagaaaaataactcatatttt |
226 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
4575877 |
catgtaagaaaaataactcctatttt |
4575852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 4593743 - 4593540
Alignment:
| Q |
1 |
tactattactgaagaaattataacaaaattaccagttactgatgaaaaagatgaagaggaaaataatttgtctatttcatcaattg-------------- |
86 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
4593743 |
tactattgctgaagaaattataacaaaattatcggttactgatgaaaaaga---agaggaaaataatttgtgtatttcatcaattgaaatattatcaatt |
4593647 |
T |
|
| Q |
87 |
-gatttttgaagcagaagaagaagcttattgttcttgatttaaatggacttcttgctgatattgtttcttcacatccaaaggaggttacaccagatgcaa |
185 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| | | |||| |||||||||| |
|
|
| T |
4593646 |
ggatttttgaag---aagaagaagcttattgttcttgatttaaatggacttcttgctgatattgtttttccacctccaaggcatgttaaaccagatgcat |
4593550 |
T |
|
| Q |
186 |
ccatagccag |
195 |
Q |
| |
|
||||||||| |
|
|
| T |
4593549 |
tcatagccag |
4593540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 4586826 - 4586614
Alignment:
| Q |
1 |
tactattactgaagaaattataacaaaattaccagttactgatgaaaaagatgaagaggaaaataatttgtctatttc---------------atcaatt |
85 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||||||| ||| ||||||| ||||||||||| ||||||| | ||| ||||||| |
|
|
| T |
4586826 |
tactattgctgaagaaattataacagaattatcagttacggataaaaaagaagaagaggaaaacaatttgtgcagttcttcaactgaaatattatcaatt |
4586727 |
T |
|
| Q |
86 |
ggatttttgaagcagaagaagaagcttattgttcttgatttaaatggacttcttgctgatattgtttcttcacatccaaaggaggttacaccagatgcaa |
185 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| | |||| ||||||||||| |
|
|
| T |
4586726 |
ggaagtttgaagaagaagaagaagcttattgttcttgatttaaatggacttcttgctgatattgtttatccacctccaaaccatgttaaaccagatgcaa |
4586627 |
T |
|
| Q |
186 |
ccatagccaggaa |
198 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
4586626 |
ccatagccgggaa |
4586614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 4602051 - 4601954
Alignment:
| Q |
101 |
aagaagaagcttattgttcttgatttaaatggacttcttgctgatattgtttcttcacatccaaaggaggttacaccagatgcaaccatagccaggaa |
198 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||| ||||||||| ||| ||||||| | |||| | |||||||||||||||| ||||| |
|
|
| T |
4602051 |
aagaaaaagcttattgttcttgatttaaatggacttgttgctgacattgtttctccacctccaaagaatgttaaatcagatgcaaccatagctaggaa |
4601954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 4537962 - 4537880
Alignment:
| Q |
1 |
tactattactgaagaaattataacaaaattaccagttactgatgaaaaagatgaagaggaaaataatttgtctatttcatcaa |
83 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| | |||| |||| ||||||| ||||||||||||||||||| |||||| |||| |
|
|
| T |
4537962 |
tactattgctgaagaaattataacagaattatctgttattgataaaaaagaagaagaggaaaataatttgtgtatttcttcaa |
4537880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 4537765 - 4537833
Alignment:
| Q |
1 |
tactattactgaagaaattataacaaaattaccagttactgatgaaaaagatgaagaggaaaataattt |
69 |
Q |
| |
|
||||||| ||||||||||||||| | |||||||| || ||||| ||||||| |||||| |||||||||| |
|
|
| T |
4537765 |
tactattgctgaagaaattataaaagaattaccaattcctgataaaaaagaagaagagaaaaataattt |
4537833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University