View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10326_high_3 (Length: 394)
Name: NF10326_high_3
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10326_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 9e-83; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 34258238 - 34258079
Alignment:
| Q |
25 |
tggttattttaccaaaaatattcagatacttcataataaaactaaaatgcataagtattgtatttaatgaatttttaaaacattaatgtagaaaatgcca |
124 |
Q |
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| T |
34258238 |
tggttattttaccaaaaatattcagatacttcataataaaactaaaatgcataagtattgtatttaatgaattttgaaaacattaatgtagaaaatgcca |
34258139 |
T |
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| Q |
125 |
atcctgaaaggtttgaagtagcactagcaccaaatagacctatcagtttccattttccaa |
184 |
Q |
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| T |
34258138 |
atcctgaaaggtttgaagtagcactagcaccaaatagacctatcagtttccattttccaa |
34258079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 191 - 283
Target Start/End: Complemental strand, 34257983 - 34257891
Alignment:
| Q |
191 |
aaaattagatttctgaatagaagaaaattcacaaccatgccaacaaaattttgtattacataatttatacacatatttcacaatacaagcctt |
283 |
Q |
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| T |
34257983 |
aaaataagatttctcaatagaagaaaattcacaaccatgccaacaaaattttgtattacataatttatacacatatttcacaatacaagcctt |
34257891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 34257844 - 34257774
Alignment:
| Q |
289 |
ttatatacataattcacttgagcaatgcttgttgctatttcaaaaccatagacaaaaagcagcttagctaa |
359 |
Q |
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| T |
34257844 |
ttatatacataattcactagacctatgcttgttgctctttcaaaaccataaacacaaagcagctaagctaa |
34257774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 337 - 376
Target Start/End: Complemental strand, 34257891 - 34257852
Alignment:
| Q |
337 |
tagacaaaaagcagcttagctaagtttgagtcacttatat |
376 |
Q |
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| T |
34257891 |
tagacaaaaagcagcttagctaagtttgagtcacttatat |
34257852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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