View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10326_high_4 (Length: 339)
Name: NF10326_high_4
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10326_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 33382533 - 33382226
Alignment:
| Q |
11 |
caaagggttctgaatcaaaagaaacattcttgaaaggttcatagagtctcatacactctacagcacacaaggagaagaaacaagtaccatgaaacacaag |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33382533 |
caaagggttctgaatcaaaagaaacattcttgaaaggttca--gagtctcatacactctacagcacacaaggagaagaaacaagtaccatgaaacacaag |
33382436 |
T |
|
| Q |
111 |
tctaggaattccaaatttagcagctgaatcagttgtccatgcgaaaaacgtgtcagaaacaacacaatctggatgttgctcaagtagtagttgctctagt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33382435 |
tctaggaattccaaatttagcagctgaatcagttgtccatgcgaaaaacgtgtcagaaacaacacaatctggatgttgctcaagtagtagttgctcaagt |
33382336 |
T |
|
| Q |
211 |
ggctcttgtaacaactttgtggccatacaaaacttaggaaagaattgtggtgaagggattgagtccatattttcacacccatctggtaaaccagcctctg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33382335 |
ggctcttgtaacaactttgtggccatacaaaacttaggaaagaattgtggtgaagggattgagtccatattttcacacccatctggtaaaccagcctctg |
33382236 |
T |
|
| Q |
311 |
agctaggaaa |
320 |
Q |
| |
|
|||||||||| |
|
|
| T |
33382235 |
agctaggaaa |
33382226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 27689361 - 27689467
Alignment:
| Q |
72 |
agcacacaaggagaagaaacaagtaccatgaaacacaagtctaggaattccaaatttagcagctgaatcagttgtccatgcgaaaaacgtgtcagaaaca |
171 |
Q |
| |
|
||||||||| || ||||||| ||| ||||| ||||||| ||||||||||||||||| ||||| ||||| |||| ||||| || ||| | |||| |||| |
|
|
| T |
27689361 |
agcacacaatgaaaagaaactagtgccatggaacacaatcctaggaattccaaattttgcagccgaatcggttgcccatggaaagaacatatcagcaaca |
27689460 |
T |
|
| Q |
172 |
acacaat |
178 |
Q |
| |
|
||||||| |
|
|
| T |
27689461 |
acacaat |
27689467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University