View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10326_low_10 (Length: 299)
Name: NF10326_low_10
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10326_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 13879297 - 13879033
Alignment:
| Q |
19 |
cagagaagtagttttttagttactattttaaatgatgaattagtttgcatgtatttgagatctaaaaagctatttagttagttaattagtgttctgttct |
118 |
Q |
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| T |
13879297 |
cagagaagtagtattttagttactattttaaatgatgaattagtttgcatgtatttgagatctaaaaagctatttagttagttaattagtgttctgttct |
13879198 |
T |
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| Q |
119 |
gtttgtaccaatttctggatttgacattaattaccaattgctatcaatcaatattataaatatatgattaacaatttcatttgctattataattatatag |
218 |
Q |
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| T |
13879197 |
gtttgtaccaatttctggatttgacattaattaccaattgctatcaatcaatattataaatatatgattaacaatttcatttgctattataattatatag |
13879098 |
T |
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| Q |
219 |
ctagttgatgcaacttaatctgccttctattttgttgcgatccacctttcaaattttgttatatt |
283 |
Q |
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| T |
13879097 |
ctagttgatgcaacttaatctgccttctattttgttgcgatcgacctttcaaattttgttatatt |
13879033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 188
Target Start/End: Complemental strand, 13885034 - 13884996
Alignment:
| Q |
150 |
taccaattgctatcaatcaatattataaatatatgatta |
188 |
Q |
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| T |
13885034 |
taccaattggtatcaatcaatattataaatatatgatta |
13884996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 13885159 - 13885075
Alignment:
| Q |
27 |
tagttttttagttactattttaaatgatgaattagtttgc---atgtatttgagatctaaaaagctatttagttagttaattagt |
108 |
Q |
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| T |
13885159 |
tagtattttagttgctattttaaatgcttaattagtatgatgaatgtattagagatctaaaaagggatttagttggttaattagt |
13885075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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