View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10326_low_12 (Length: 281)
Name: NF10326_low_12
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10326_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 38447491 - 38447745
Alignment:
| Q |
17 |
agcttggatactattcgcatgcactttgagacaaatttggttgatgagaaagggaagaagcaaatttcttcggagagcgatgttgaagtaaaccatgaag |
116 |
Q |
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| T |
38447491 |
agcttggatactattcgcatgcactttgagacaaatttggttgatgagaaagggaagaagcaaatttcttcggagagcgatgttgaagtaaaccatgacg |
38447590 |
T |
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| Q |
117 |
acataatgaatacggaactttgggatgacatgttcagcacattagtcaatgacgatgacaataacttgcatgacaagcttccatgcgatgttaatgatgc |
216 |
Q |
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| T |
38447591 |
acataatgaatccggaactttgggatgacatgttcagcacattagtgaatgacgatgacaataacttgcatgacaagcttccatacgatgttagtgatgc |
38447690 |
T |
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| Q |
217 |
cttagatacttgcatgaaaatgcaatcagatctgcctccactcccaccacctatg |
271 |
Q |
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| T |
38447691 |
cttagacacttgcatggcaatgcagtcagatctgcctccactcccactacctatg |
38447745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 38343298 - 38343472
Alignment:
| Q |
17 |
agcttggatactattcgcatgcactttgagacaaatttggttgatgagaaagggaagaagcaaatttcttcggagagcgatgttgaagtaaaccatgaag |
116 |
Q |
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| T |
38343298 |
agcttggatactattcgcatgcactttgagacaaatttggttgatgagaaagggaagaagcaaatttcttcggagagcgatgttgaagtaaaccatgacg |
38343397 |
T |
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| Q |
117 |
acataatgaatacggaactttgggatgacatgttcagcacattagtcaatgacgatgacaataacttgcatgaca |
191 |
Q |
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| T |
38343398 |
acataatgaatccggaactttgggatgacatgttcagcacattagtgaatgacgatgacaataacttgcatgaca |
38343472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 110
Target Start/End: Complemental strand, 26032785 - 26032718
Alignment:
| Q |
43 |
tgagacaaatttggttgatgagaaagggaagaagcaaatttcttcggagagcgatgttgaagtaaacc |
110 |
Q |
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|||||||||||| |||||||| ||||||||||||| ||||| | |||| ||||||||||| ||||| |
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| T |
26032785 |
tgagacaaatttcgttgatgaaaaagggaagaagcctatttcgttggaggacgatgttgaagcaaacc |
26032718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 38448004 - 38448067
Alignment:
| Q |
49 |
aaatttggttgatgagaaagggaagaagcaaatttcttcggagagcgatgttgaagtaaaccat |
112 |
Q |
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| T |
38448004 |
aaattttgttgatgaagaagggaagaagccagtttcttcggagaacgattttgaaggaaaccat |
38448067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 53351021 - 53350960
Alignment:
| Q |
49 |
aaatttggttgatgagaaagggaagaagcaaatttcttcggagagcgatgttgaagtaaacc |
110 |
Q |
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||||||||||||||| ||||| ||||||| |||||||| | || ||||||||||| ||||| |
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| T |
53351021 |
aaatttggttgatgaaaaaggaaagaagccaatttctttgaaggacgatgttgaagcaaacc |
53350960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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