View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10326_low_14 (Length: 274)
Name: NF10326_low_14
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10326_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 223
Target Start/End: Original strand, 32725432 - 32725637
Alignment:
| Q |
17 |
tgaagttgttaggcttagctaaatccttacttacgttaattaatcgaagga----atgttacactttcaaaagtgaattaaaatatgatgtgatgtgata |
112 |
Q |
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| T |
32725432 |
tgaagttgttaggcttagctaaatccttacttacgttaattaatcgaaggaatatatgttacactttcaaaagtgaattaaaatatgatgtgatgtgata |
32725531 |
T |
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| Q |
113 |
annnnnnngtttgcataaaatgtgataattatattatattaatgagaacaaatatttgcgaccacagtacgtgaaggatatagtggcaaattttatccaa |
212 |
Q |
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| T |
32725532 |
attttttttgttgcataaaatgtgata-----attatattaatgagtacaaatatttgcgaccacagtacgtgaaggatatagtggcaaattttatccag |
32725626 |
T |
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| Q |
213 |
gtgcaagtatt |
223 |
Q |
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||||||||||| |
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| T |
32725627 |
gtgcaagtatt |
32725637 |
T |
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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 259
Target Start/End: Complemental strand, 54801170 - 54801131
Alignment:
| Q |
220 |
tatttaaacaattatttggtacaatttatttgacaacctt |
259 |
Q |
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| T |
54801170 |
tatttgaacaattatttggtacaatttatttgacaacctt |
54801131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 27688803 - 27688760
Alignment:
| Q |
227 |
acaattatttggtacaatttatttgacaacctttcttctctctc |
270 |
Q |
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| T |
27688803 |
acaattatttggtacaatctatttgacaaccttccttttctctc |
27688760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 269
Target Start/End: Original strand, 51172205 - 51172254
Alignment:
| Q |
220 |
tatttaaacaattatttggtacaatttatttgacaacctttcttctctct |
269 |
Q |
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||||| |||||| |||||||||||| |||||||||| ||||||| ||||| |
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| T |
51172205 |
tatttgaacaatcatttggtacaatctatttgacaatctttcttttctct |
51172254 |
T |
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