View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10326_low_16 (Length: 252)

Name: NF10326_low_16
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10326_low_16
NF10326_low_16
[»] chr8 (5 HSPs)
chr8 (14-130)||(38057718-38057834)
chr8 (8-130)||(24452884-24453006)
chr8 (198-251)||(38057597-38057650)
chr8 (40-108)||(8845206-8845274)
chr8 (40-99)||(534136-534195)
[»] chr2 (8 HSPs)
chr2 (8-126)||(9880354-9880472)
chr2 (40-126)||(16862469-16862555)
chr2 (40-126)||(6520295-6520381)
chr2 (199-245)||(9880545-9880591)
chr2 (41-83)||(8567707-8567749)
chr2 (40-102)||(44189727-44189789)
chr2 (40-108)||(26318519-26318587)
chr2 (59-107)||(20688505-20688553)
[»] chr4 (6 HSPs)
chr4 (8-126)||(45050282-45050400)
chr4 (40-112)||(12567684-12567756)
chr4 (37-114)||(25913924-25914001)
chr4 (40-108)||(43345683-43345751)
chr4 (58-107)||(23235050-23235099)
chr4 (206-251)||(45050164-45050209)
[»] chr1 (10 HSPs)
chr1 (8-106)||(43149562-43149661)
chr1 (46-110)||(20995280-20995344)
chr1 (40-108)||(27441559-27441627)
chr1 (40-126)||(14790769-14790855)
chr1 (49-107)||(25780774-25780832)
chr1 (40-114)||(38037541-38037615)
chr1 (45-110)||(1067637-1067702)
chr1 (202-251)||(43149408-43149457)
chr1 (40-110)||(42738865-42738935)
chr1 (63-107)||(25586998-25587042)
[»] chr3 (6 HSPs)
chr3 (8-97)||(3285234-3285323)
chr3 (20-97)||(3272129-3272206)
chr3 (40-126)||(8238341-8238427)
chr3 (40-126)||(41768557-41768643)
chr3 (40-103)||(26955172-26955235)
chr3 (40-83)||(8552588-8552631)
[»] chr5 (3 HSPs)
chr5 (37-126)||(19337352-19337441)
chr5 (56-107)||(39066286-39066337)
chr5 (61-110)||(17174046-17174095)
[»] chr7 (5 HSPs)
chr7 (60-119)||(4883721-4883780)
chr7 (40-103)||(22265105-22265168)
chr7 (63-104)||(37257978-37258019)
chr7 (40-108)||(2626784-2626852)
chr7 (40-108)||(21015353-21015421)
[»] chr6 (7 HSPs)
chr6 (40-126)||(12952140-12952226)
chr6 (60-107)||(2893405-2893452)
chr6 (53-126)||(12413630-12413703)
chr6 (40-110)||(23624037-23624107)
chr6 (40-110)||(31341101-31341171)
chr6 (40-83)||(13240074-13240117)
chr6 (40-118)||(12664517-12664595)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 38057834 - 38057718
Alignment:
Q  14 aagaagagcagcttcaagcaactagcgaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaattatg 113  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||    
T  38057834 aagaagagcagcttcaagcaattagcgaaatggtgaagtttcagtcattttggtggttgaaatcgaaatacgttactttcgattttgattatcaattgtg 38057735  T
Q  114 gtggcagagtcctgtag 130  Q
    | |||||||||||||||    
T  38057734 gcggcagagtcctgtag 38057718  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 24453006 - 24452884
Alignment:
Q  8 agagagaagaagagcagcttcaagcaactagcgaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatca 107  Q
    ||||| ||||||| ||||||||||||| | | |||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24453006 agagaaaagaagatcagcttcaagcaatttgtgaaagggtgaagcttaagtccttttggtggttgaaatcgaaatatgttactttcgattttgattatca 24452907  T
Q  108 attatggtggcagagtcctgtag 130  Q
    ||||||| |||||||||||||||    
T  24452906 attatggcggcagagtcctgtag 24452884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 38057650 - 38057597
Alignment:
Q  198 gttagccgttgtggtgtttgtactgtttgttgaactctgttttgtctaggccct 251  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  38057650 gttagccgttgtggtgtttgtaccgtttgttgaactctattttgtctaggccct 38057597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 8845206 - 8845274
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaa 108  Q
    |||||||||||| || |||||||||||||||||||||||||||| |||| ||| |||||||| ||||||    
T  8845206 gaaagggtgaagcttaagtcattttggtggttgaaatcgaaatacgttaattttgattttgactatcaa 8845274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 534195 - 534136
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgatttt 99  Q
    |||||||||||| ||||||| |||||||| ||||| |||||||||||||||||| |||||    
T  534195 gaaagggtgaagcttcagtctttttggtgattgaagtcgaaatatgttactttctatttt 534136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 9880354 - 9880472
Alignment:
Q  8 agagagaagaagagcagcttcaagcaactagcgaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatca 107  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9880354 agagaaaagaagagcagcttcaagcaattagtgaaagggtgaagcttcagtcattttggtggttgaaatcgaaatacgttactttcgattttgattatca 9880453  T
Q  108 attatggtggcagagtcct 126  Q
    ||| |||||||| ||||||    
T  9880454 attgtggtggcaaagtcct 9880472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 16862469 - 16862555
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaattatggtggcagagtcct 126  Q
    |||||||||||| ||||||| |||||||||||||| || ||||| | ||||||||||||||| || ||||||||| |||||||||||    
T  16862469 gaaagggtgaagcttcagtctttttggtggttgaagtcaaaatacgctactttcgattttgactaccaattatggcggcagagtcct 16862555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 6520295 - 6520381
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaattatggtggcagagtcct 126  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||| ||| | |||  | ||||||  |||| |||||||||||    
T  6520295 gaaagggtgaagcttcagtcattttggtggttgaaatcgaaatacgttaattttgttttcaactatcaagaatggcggcagagtcct 6520381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 9880545 - 9880591
Alignment:
Q  199 ttagccgttgtggtgtttgtactgtttgttgaactctgttttgtcta 245  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  9880545 ttagccgttgtggtgtttgtactgtttgttgaactctattttgtcta 9880591  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 41 - 83
Target Start/End: Original strand, 8567707 - 8567749
Alignment:
Q  41 aaagggtgaagtttcagtcattttggtggttgaaatcgaaata 83  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  8567707 aaagggtgaagcttcagtcattttggtggttgaaatcgaaata 8567749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 44189789 - 44189727
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgat 102  Q
    |||||||| ||| |||| || ||||||||||| || |||||||||||||||||||||| ||||    
T  44189789 gaaagggttaagcttcaatccttttggtggttaaagtcgaaatatgttactttcgattgtgat 44189727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 26318519 - 26318587
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaa 108  Q
    |||||||  ||| |||| || ||||||||||||||||||||||| |||| ||| |||||||| ||||||    
T  26318519 gaaagggcaaagcttcaatctttttggtggttgaaatcgaaatacgttaattttgattttgactatcaa 26318587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 20688553 - 20688505
Alignment:
Q  59 cattttggtggttgaaatcgaaatatgttactttcgattttgattatca 107  Q
    |||||||||||||| ||  |||||||| |||||||| ||||||||||||    
T  20688553 cattttggtggttgcaagagaaatatgctactttcggttttgattatca 20688505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 45050400 - 45050282
Alignment:
Q  8 agagagaagaagagcagcttcaagcaactagcgaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatca 107  Q
    ||||| |||||| |||||||||||||| |||||||||||||||| ||||||| ||||||||  ||||||||||||||||||| |||||||||||||||||    
T  45050400 agagaaaagaagtgcagcttcaagcaattagcgaaagggtgaagcttcagtccttttggtgactgaaatcgaaatatgttaccttcgattttgattatca 45050301  T
Q  108 attatggtggcagagtcct 126  Q
    ||| ||| |||||| ||||    
T  45050300 attgtggcggcagaatcct 45050282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 12567756 - 12567684
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaattat 112  Q
    |||| ||||||||||||| ||| ||||||||| |||||||||||||||  ||||||||||||||| |||||||    
T  12567756 gaaaaggtgaagtttcagacatattggtggtttaaatcgaaatatgtttttttcgattttgattaccaattat 12567684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 25913924 - 25914001
Alignment:
Q  37 agcgaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaattatgg 114  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||||||| || ||| ||||| ||||| |||| ||||    
T  25913924 agcgaaagggtgaagcttcagtttttttggtggttgaaatcgaaatatgatatttttgatttcgattaccaatcatgg 25914001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 43345683 - 43345751
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaa 108  Q
    ||||| |||||| ||||||||||||||||||||||||| ||||| |||| ||| |||||||| ||||||    
T  43345683 gaaagagtgaagcttcagtcattttggtggttgaaatcaaaataagttaattttgattttgactatcaa 43345751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 23235099 - 23235050
Alignment:
Q  58 tcattttggtggttgaaatcgaaatatgttactttcgattttgattatca 107  Q
    |||||| ||||||| ||||| || |||||||||||||||||| |||||||    
T  23235099 tcatttcggtggttaaaatcaaagtatgttactttcgatttttattatca 23235050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 45050209 - 45050164
Alignment:
Q  206 ttgtggtgtttgtactgtttgttgaactctgttttgtctaggccct 251  Q
    |||||||| |||||| | |||||| |||||||||||||||||||||    
T  45050209 ttgtggtgattgtacagattgttggactctgttttgtctaggccct 45050164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 43149661 - 43149562
Alignment:
Q  8 agagagaagaagagcagcttcaagcaact-agcgaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatc 106  Q
    ||||| |||||||| || ||||||||| | ||||||||||||||| ||||||| |||||||||||||||||||||||   ||||||||||||||||||||    
T  43149661 agagaaaagaagagtagattcaagcaaattagcgaaagggtgaagcttcagtccttttggtggttgaaatcgaaatacactactttcgattttgattatc 43149562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 20995344 - 20995280
Alignment:
Q  46 gtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaatt 110  Q
    |||||| ||||||| |||| ||||||||| | | |||||||||||||||||||||||||||||||    
T  20995344 gtgaagcttcagtctttttagtggttgaagttgtaatatgttactttcgattttgattatcaatt 20995280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 27441559 - 27441627
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaa 108  Q
    |||||||||||| |||| ||||||||||||||||||||||||||  ||| ||| |||||||| ||||||    
T  27441559 gaaagggtgaagcttcaatcattttggtggttgaaatcgaaatacattaattttgattttgactatcaa 27441627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 14790855 - 14790769
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaattatggtggcagagtcct 126  Q
    |||||||| ||| ||| |||||||||||||||||||||||||||   || ||| ||||||||||||||| | ||| ||| |||||||    
T  14790855 gaaagggtaaagcttccgtcattttggtggttgaaatcgaaatacactaattttgattttgattatcaagtgtggcggcggagtcct 14790769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 25780832 - 25780774
Alignment:
Q  49 aagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatca 107  Q
    ||||| ||||| ||||| | |||||||||||| ||||||||||||||||||||||||||    
T  25780832 aagttgcagtctttttgattgttgaaatcgaattatgttactttcgattttgattatca 25780774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 38037541 - 38037615
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaattatgg 114  Q
    |||| ||||||| ||||||||| ||| ||||| || ||||||||||||   |||||||||||||| |||||||||    
T  38037541 gaaaaggtgaagcttcagtcatattgatggtttaagtcgaaatatgttttgttcgattttgattaccaattatgg 38037615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 1067637 - 1067702
Alignment:
Q  45 ggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaatt 110  Q
    ||||||| ||| ||| || | ||||||||| |||||||||||||||||| |||||||||| |||||    
T  1067637 ggtgaagcttcggtctttctagtggttgaagtcgaaatatgttactttccattttgattaccaatt 1067702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 43149457 - 43149408
Alignment:
Q  202 gccgttgtggtgtttgtactgtttgttgaactctgttttgtctaggccct 251  Q
    |||||||||||| |||||| | |||||||||| |||||||||||||||||    
T  43149457 gccgttgtggtgattgtacagattgttgaactttgttttgtctaggccct 43149408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 42738865 - 42738935
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaatt 110  Q
    |||||||| ||| |||  || ||||||||||| || ||||||||| |||||||||||| |||||| |||||    
T  42738865 gaaagggttaagcttctatccttttggtggttaaagtcgaaatatattactttcgattatgattaccaatt 42738935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Complemental strand, 25587042 - 25586998
Alignment:
Q  63 ttggtggttgaaatcgaaatatgttactttcgattttgattatca 107  Q
    ||||||||||||||| ||| ||| |||||| ||||||||||||||    
T  25587042 ttggtggttgaaatcaaaacatgctacttttgattttgattatca 25586998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 3285234 - 3285323
Alignment:
Q  8 agagagaagaagagcagcttcaagcaactagcgaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgatt 97  Q
    ||||| |||||||||| |||||||| | |||||||||||||||| ||||||| |||||||||  |||||||||||| ||||| |||||||    
T  3285234 agagaaaagaagagcaacttcaagcgattagcgaaagggtgaagcttcagtccttttggtggcagaaatcgaaataagttaccttcgatt 3285323  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 3272129 - 3272206
Alignment:
Q  20 agcagcttcaagcaactagcgaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgatt 97  Q
    ||||||||||||| | |||||||||||||||| ||| ||| ||||||||| ||||||||||||| ||||| |||||||    
T  3272129 agcagcttcaagcgattagcgaaagggtgaagcttcggtccttttggtggctgaaatcgaaataagttaccttcgatt 3272206  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 126
Target Start/End: Complemental strand, 8238427 - 8238341
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaattatggtggcagagtcct 126  Q
    |||||||||||| |||||||||| | ||||||||||||||||||  ||| ||| |||||| ||||||||  |||| |||||||||||    
T  8238427 gaaagggtgaagcttcagtcattctagtggttgaaatcgaaatacattaattttgattttcattatcaagaatggcggcagagtcct 8238341  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 41768557 - 41768643
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaattatggtggcagagtcct 126  Q
    |||||||| ||  |||| |||||||||||||||||||||||||||| || ||| |||||||||||||||   ||| |||||||||||    
T  41768557 gaaagggtaaaacttcattcattttggtggttgaaatcgaaatatgctaattttgattttgattatcaaacgtggcggcagagtcct 41768643  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 26955235 - 26955172
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgatt 103  Q
    |||||||| ||| ||| ||| |||||||| ||||| |||||||| |||||||||||||||||||    
T  26955235 gaaagggttaagcttcggtctttttggtgattgaagtcgaaatacgttactttcgattttgatt 26955172  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 8552588 - 8552631
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaata 83  Q
    |||||||||||  ||| |||||||||||||||||||||||||||    
T  8552588 gaaagggtgaaacttcggtcattttggtggttgaaatcgaaata 8552631  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 19337441 - 19337352
Alignment:
Q  37 agcgaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaattatggtggcagagtcct 126  Q
    ||||||||||||||| || ||||| |||||||||||||||| ||||||| || ||| ||||||||||||||||  ||| ||| |||||||    
T  19337441 agcgaaagggtgaagctttagtcaatttggtggttgaaatcaaaatatgctatttttgattttgattatcaatcgtggcggcggagtcct 19337352  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 39066286 - 39066337
Alignment:
Q  56 agtcattttggtggttgaaatcgaaatatgttactttcgattttgattatca 107  Q
    |||||||||| ||||||||||||||||||| |||||||  ||||||||||||    
T  39066286 agtcattttgatggttgaaatcgaaatatgctactttcacttttgattatca 39066337  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 17174046 - 17174095
Alignment:
Q  61 ttttggtggttgaaatcgaaatatgttactttcgattttgattatcaatt 110  Q
    ||||||||||| || ||||||||| |||||||||||| ||||||||||||    
T  17174046 ttttggtggttaaagtcgaaatatattactttcgattatgattatcaatt 17174095  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 4883780 - 4883721
Alignment:
Q  60 attttggtggttgaaatcgaaatatgttactttcgattttgattatcaattatggtggca 119  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||||| ||| ||||    
T  4883780 attttggtggttaaaatcgaaatatgctactttcgattttgattatcaattgtggcggca 4883721  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 22265168 - 22265105
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgatt 103  Q
    |||||||||||||||  ||| |||| ||||||||| ||||||||||||||||| ||||||||||    
T  22265168 gaaagggtgaagttttggtcttttttgtggttgaagtcgaaatatgttacttttgattttgatt 22265105  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 37258019 - 37257978
Alignment:
Q  63 ttggtggttgaaatcgaaatatgttactttcgattttgatta 104  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  37258019 ttggtggttgaattcaaaatatgttactttcgattttgatta 37257978  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 2626784 - 2626852
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaa 108  Q
    |||||||  ||| |||||||||||||||||||||||||||||||   || ||| ||||||| |||||||    
T  2626784 gaaagggaaaagcttcagtcattttggtggttgaaatcgaaatacactaattttgattttgtttatcaa 2626852  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 108
Target Start/End: Complemental strand, 21015421 - 21015353
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaa 108  Q
    |||||||  ||| |||| || |||||||||||||||||||||||  ||| ||| |||||||| ||||||    
T  21015421 gaaagggcaaagcttcaatctttttggtggttgaaatcgaaatacattaattttgattttgactatcaa 21015353  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 12952140 - 12952226
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaattatggtggcagagtcct 126  Q
    |||||||| ||| ||||||||||||||||||||||||| ||||||  || ||| ||||||||||||||| | ||| ||| |||||||    
T  12952140 gaaagggtaaagcttcagtcattttggtggttgaaatcaaaatataataattttgattttgattatcaaatgtggcggcggagtcct 12952226  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 2893405 - 2893452
Alignment:
Q  60 attttggtggttgaaatcgaaatatgttactttcgattttgattatca 107  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||    
T  2893405 attttggtggttaaaatcgagatatgttactttcgattttgattatca 2893452  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 12413703 - 12413630
Alignment:
Q  53 ttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaattatggtggcagagtcct 126  Q
    |||||||||  |||||||||||||||||||| | || ||| ||||||||||||||| | ||| |||||||||||    
T  12413703 ttcagtcatgctggtggttgaaatcgaaatacgctaattttgattttgattatcaagtgtggcggcagagtcct 12413630  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 23624107 - 23624037
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaatt 110  Q
    |||| ||||||| ||||||| ||||| |||||||| |||  ||||||||| ||||||||||||||| ||||    
T  23624107 gaaaaggtgaagcttcagtctttttgatggttgaagtcggcatatgttacgttcgattttgattattaatt 23624037  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 31341101 - 31341171
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaatt 110  Q
    |||||||||||| |||| || ||  ||||||||||||||| ||||||||| ||||||||||| || |||||    
T  31341101 gaaagggtgaagcttcaatctttccggtggttgaaatcgacatatgttaccttcgattttgactaccaatt 31341171  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 13240117 - 13240074
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaata 83  Q
    |||| ||||||| ||||||||||||||| |||||||||||||||    
T  13240117 gaaatggtgaagcttcagtcattttggttgttgaaatcgaaata 13240074  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 12664595 - 12664517
Alignment:
Q  40 gaaagggtgaagtttcagtcattttggtggttgaaatcgaaatatgttactttcgattttgattatcaattatggtggc 118  Q
    |||||||| ||| |||  |||||||||||||| || |  ||||||||||| ||||||| |||||| ||||| |||||||    
T  12664595 gaaagggttaagcttctatcattttggtggttaaatttaaaatatgttacattcgattatgattaccaattttggtggc 12664517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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