View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10326_low_2 (Length: 442)
Name: NF10326_low_2
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10326_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 133 - 402
Target Start/End: Original strand, 13879406 - 13879675
Alignment:
| Q |
133 |
cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879406 |
cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt |
13879505 |
T |
|
| Q |
233 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcga |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879506 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcga |
13879605 |
T |
|
| Q |
333 |
caagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13879606 |
caagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatc |
13879675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 133 - 392
Target Start/End: Original strand, 13875189 - 13875448
Alignment:
| Q |
133 |
cttgttcttgagcttaggaaccacaacttcaatgaaattgttctctatcattttggctttagtgttaacaaagtcgcagtgcttccctttcaagttaagt |
232 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||| ||| |
|
|
| T |
13875189 |
cttgttgttgagcttgggaaccacaatttcaaggaaattgttctctatcattttggctttagtgttaacaacgtcgaaatgcttccctttcaagtcgagt |
13875288 |
T |
|
| Q |
233 |
gttactgaaaacagatttcgaccgggaagaacatcctcaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgtcagcga |
332 |
Q |
| |
|
|| ||||||| |||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13875289 |
gtacctgaaaatcgatttcgacctggaagagcatccttaatcctgagagtaccgtgatcaacacagacatcaatctcttccttcctcacgttgttggcga |
13875388 |
T |
|
| Q |
333 |
caagattcgaccgcaaaatcacagactcctcagtctccgtaaaatcccagagaacaagat |
392 |
Q |
| |
|
| |||||| |||| ||||||| ||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
13875389 |
ccagattcaaccgaaaaatcaaagactcctcggtctcctcaaaatcacagagaacaagat |
13875448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 13879274 - 13879344
Alignment:
| Q |
1 |
agtaactaaaaaactacttctctgttcatccctccctcttttaagtgaaacctaaaacatatctagatgag |
71 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13879274 |
agtaactaaaatactacttctctgttcatccctccctcttttaagtgaaacctaaaacatagctagatgag |
13879344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University