View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10326_low_20 (Length: 248)
Name: NF10326_low_20
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10326_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 596004 - 596233
Alignment:
| Q |
1 |
tgaaaagaggatcacaatgaaaatgttatacaccattcccttgcagccattttgaagtgttttatgcatccattaattggacacttttccaaggacgaca |
100 |
Q |
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| T |
596004 |
tgaaaagaggatcacaatgaaaatgttatacaccattcccttgcagccattttgaagtgttttatgcaaccattaattggacacttttccaaggacgaca |
596103 |
T |
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| Q |
101 |
cttatcaccgttcaaacagcctccatttaagtttattttccaattgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacgatgg |
200 |
Q |
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| T |
596104 |
cttatcaccgttcaaacagcctccatttaagtttattttccaatcgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacgatgg |
596203 |
T |
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| Q |
201 |
gggttaccaagccatgtaaaactgcaggag |
230 |
Q |
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| T |
596204 |
gggttaccaagccatgtaaaactgcaggag |
596233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 17373599 - 17373831
Alignment:
| Q |
1 |
tgaaaagaggatcacaatgaaaatgtta---tacaccattcccttgcagccattttgaagtgttttatgcatccattaattggacacttttccaaggacg |
97 |
Q |
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| T |
17373599 |
tgaaaagaggatcacaatgaaaatgttactatacaccattcccttgcagccattttgaagtgttttatgcatccattaattggacacttttccaaggacg |
17373698 |
T |
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| Q |
98 |
acacttatcaccgttcaaacagcctccatttaagtttattttccaattgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacga |
197 |
Q |
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| T |
17373699 |
acacttatcaccgttcaaacatcctccatttaagtttattttccaattgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacga |
17373798 |
T |
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| Q |
198 |
tgggggttaccaagccatgtaaaactgcaggag |
230 |
Q |
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| T |
17373799 |
tgggggttaccaagccatgtaaaactgcaggag |
17373831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 230
Target Start/End: Complemental strand, 6608887 - 6608708
Alignment:
| Q |
51 |
tttgaagtgttttatgcatccattaattggacacttttccaaggacgacacttatcaccgttcaaacagcctccatttaagtttattttccaattgcaat |
150 |
Q |
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| T |
6608887 |
tttgaagtgttgtacgcatccattaattggatacttttccaaggaacacacttttgatcgttcaaacagcctccatttacgtttattccccatgtgcaat |
6608788 |
T |
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| Q |
151 |
ggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggag |
230 |
Q |
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| T |
6608787 |
gattgcaattgtgacggttttggtcgtaaatgtcaagataataaacatgggggttttgaggccatgtaaaactgcaggag |
6608708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 6613356 - 6613302
Alignment:
| Q |
173 |
gtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcag |
227 |
Q |
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| T |
6613356 |
gtcgtaaatgtcaagataatgtcgatgcgggtttccaggccatgtaaaactgcag |
6613302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 22823229 - 22823281
Alignment:
| Q |
170 |
ttggtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaac |
222 |
Q |
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| T |
22823229 |
ttggtcgtaaatgtcaagataatgtcgatgtgggtttccaggccatgtaaaac |
22823281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 9145868 - 9145922
Alignment:
| Q |
173 |
gtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcag |
227 |
Q |
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| T |
9145868 |
gtcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcag |
9145922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 9180564 - 9180510
Alignment:
| Q |
173 |
gtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcag |
227 |
Q |
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| T |
9180564 |
gtcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcag |
9180510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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