View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10326_low_28 (Length: 229)
Name: NF10326_low_28
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10326_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 6745330 - 6745121
Alignment:
| Q |
15 |
cttaagggtattttcaatggagataattcattcccattacatattcatgaagaaatttgaaccatgagaggtgaaagcttacaaacttagtaaatcacta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6745330 |
cttaagggtattttcaatggagataattcatttccattacatattcatgaagaaatttgaaccatgagaggtgaaagcttacaaacttagtaaatcacta |
6745231 |
T |
|
| Q |
115 |
agccacatataaacttggccttaaatcattatcataaacacaatttaatacccttctcatatctatttccacgcatgaaaatagtcaaatttaaagcttc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6745230 |
agccacatataaacttggccttaaatcattatcataaacacaatttaatacccttctcatatctatttccacgcatgaaaatagtcaaatttaaagcttc |
6745131 |
T |
|
| Q |
215 |
gattattttt |
224 |
Q |
| |
|
|||||||||| |
|
|
| T |
6745130 |
gattattttt |
6745121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 9489983 - 9489771
Alignment:
| Q |
15 |
cttaagggtattttcaatggagataattcattcccattacatattcatgaagaaatttgaaccatgagaggtgaaagcttacaaacttagtaaatcacta |
114 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9489983 |
cttaagggtattttcaatggagagaattcatttccattacatattcatgaagaaatttgaaccatgagaggtgaaagcttacaaacttagtaaatcacta |
9489884 |
T |
|
| Q |
115 |
ag---ccacatataaacttggccttaaatcattatcataaacacaatttaatacccttctcatatctatttccacgcatgaaaatagtcaaatttaaagc |
211 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9489883 |
agaagccacatataaacttagccttaaatcattatcataaacacaatttaatacccttctcatatctatttccacgcatgaaaatagtcaaatttaaagc |
9489784 |
T |
|
| Q |
212 |
ttcgattattttt |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
9489783 |
ttcgattattttt |
9489771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 4434733 - 4434521
Alignment:
| Q |
15 |
cttaagggtattttcaatggagataattcattcccattacatattcatgaagaaatttgaaccatgagaggtgaaagcttacaaacttagtaaatcacta |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4434733 |
cttaagggtattttcaatggagagaattcctttccattacatattcatgaagaaatttgaaccatgagaggtgaaagcttacaaacttagtaaatcacta |
4434634 |
T |
|
| Q |
115 |
ag---ccacatataaacttggccttaaatcattatcataaacacaatttaatacccttctcatatctatttccacgcatgaaaatagtcaaatttaaagc |
211 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4434633 |
agaagccacatataaacttagccttaaatcattatcataaacacaatttaatacccttctcatatctacttccacgcatgaaaatagtcaaatttaaagc |
4434534 |
T |
|
| Q |
212 |
ttcgattattttt |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4434533 |
ttcgattattttt |
4434521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 1143512 - 1143441
Alignment:
| Q |
82 |
gaggtgaaagcttacaaacttagtaaatcactaa---gccacatataaacttggccttaaatcattatcata |
150 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||| ||| || ||||||||||||||||||| |
|
|
| T |
1143512 |
gaggtgaaagcatacaaacttagtaaatcactaatatgccacatacaaatttagccttaaatcattatcata |
1143441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University