View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10326_low_30 (Length: 223)
Name: NF10326_low_30
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10326_low_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 2488193 - 2487998
Alignment:
| Q |
15 |
atgaatttgactttactttgtatatttgtactagctctcactcaaa--gaatatgaatctaatatatgtgctaaaccaatgctataacaatcaaattgtg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2488193 |
atgaatttgactttactttgtatatttgtactagctctcactcaaaaagaatatgaatctaacatatgtgctaaaccaatgctataacaatcaaattgtg |
2488094 |
T |
|
| Q |
113 |
ataacacattagaaatcgtctttgatgtatgtgtactaaaatatttgggtacagtttagaatgccattcaagaaaacatgatgaaaatgtattctt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2488093 |
ataacacattagaaatcgtctttgatgtatgtgtactaaaatatttgggtacagtttagaatgccattcaagaaaacatgatgaaaatgtattctt |
2487998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 8806957 - 8806998
Alignment:
| Q |
58 |
aaagaatatgaatctaatatatgtgctaaaccaatgctataa |
99 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
8806957 |
aaagattatgaatctaatatatgtgttaaaccaattctataa |
8806998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University