View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10326_low_31 (Length: 221)

Name: NF10326_low_31
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10326_low_31
NF10326_low_31
[»] chr5 (10 HSPs)
chr5 (1-203)||(37198039-37198241)
chr5 (97-183)||(32059644-32059729)
chr5 (90-146)||(26516366-26516422)
chr5 (90-146)||(41277398-41277454)
chr5 (100-183)||(36539675-36539758)
chr5 (73-146)||(15003545-15003618)
chr5 (131-183)||(3951883-3951935)
chr5 (77-133)||(9215903-9215959)
chr5 (99-183)||(19177408-19177492)
chr5 (90-146)||(36639488-36639544)
[»] chr2 (13 HSPs)
chr2 (79-184)||(28933752-28933857)
chr2 (98-146)||(14666514-14666562)
chr2 (98-184)||(11344340-11344426)
chr2 (90-144)||(37053562-37053616)
chr2 (90-180)||(18962086-18962176)
chr2 (73-183)||(28803537-28803647)
chr2 (90-183)||(3673736-3673829)
chr2 (90-182)||(14277941-14278034)
chr2 (97-146)||(33942116-33942165)
chr2 (90-146)||(5043608-5043664)
chr2 (90-146)||(11513864-11513920)
chr2 (96-144)||(33944573-33944621)
chr2 (90-146)||(36863673-36863729)
[»] chr7 (5 HSPs)
chr7 (73-167)||(28340427-28340521)
chr7 (91-146)||(5006558-5006613)
chr7 (76-183)||(3610774-3610881)
chr7 (73-182)||(27548193-27548302)
chr7 (111-183)||(45593788-45593860)
[»] chr3 (9 HSPs)
chr3 (73-183)||(38462210-38462320)
chr3 (129-183)||(16790443-16790497)
chr3 (90-146)||(19679527-19679583)
chr3 (76-146)||(31337435-31337505)
chr3 (90-180)||(42039091-42039180)
chr3 (92-146)||(48397612-48397666)
chr3 (119-180)||(20192683-20192744)
chr3 (90-146)||(2201094-2201150)
chr3 (119-183)||(44374721-44374785)
[»] chr1 (9 HSPs)
chr1 (97-179)||(1730825-1730906)
chr1 (74-176)||(40304087-40304188)
chr1 (97-183)||(46980184-46980270)
chr1 (90-145)||(10581125-10581180)
chr1 (90-144)||(5150905-5150959)
chr1 (72-146)||(27738210-27738284)
chr1 (97-145)||(17422993-17423041)
chr1 (73-185)||(43029433-43029544)
chr1 (90-146)||(48830124-48830180)
[»] chr8 (6 HSPs)
chr8 (84-146)||(34770858-34770920)
chr8 (75-183)||(10727126-10727233)
chr8 (90-182)||(38036160-38036252)
chr8 (90-145)||(6864507-6864562)
chr8 (90-146)||(2093245-2093301)
chr8 (129-185)||(26370915-26370971)
[»] chr6 (4 HSPs)
chr6 (90-181)||(4006645-4006736)
chr6 (101-183)||(10452419-10452501)
chr6 (139-184)||(7148595-7148640)
chr6 (90-146)||(1402962-1403018)
[»] scaffold0590 (1 HSPs)
scaffold0590 (127-183)||(1159-1215)
[»] scaffold0275 (1 HSPs)
scaffold0275 (127-183)||(2760-2816)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 37198039 - 37198241
Alignment:
Q  1 aaagaatttcttgctgagttgaaggtgttgacacgtgttcatcacgtgaacctggtaatatttgaaacttaatccataagctatctagcatagctaatga 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37198039 aaagaatttcttgctgagttgaaggtgttgacgcgtgttcatcacgtgaacctggtaatatttgaaacttaatccataagctatctagcatagctaatga 37198138  T
Q  101 aaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcacttatatatgtttatctatggatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37198139 aaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcacttatatatgtttatctatggatc 37198238  T
Q  201 acc 203  Q
    |||    
T  37198239 acc 37198241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 32059644 - 32059729
Alignment:
Q  97 atgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcacttatat 183  Q
    |||||||||  ||||| |||| |||||| |||||||| |||||||||||| |||||  | ||| ||||||| |||||||||||||||    
T  32059644 atgaaaacagcttatagcttatatgaaaacagtttgactttattttatct-tagttacaaaaacagcttatacataagcacttatat 32059729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 26516422 - 26516366
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    |||||| ||||||||| ||||||||||| ||||||  ||||||| ||||||||||||    
T  26516422 atagcttatgaaaacagtttataacttatatgaaagtagtttgactttattttatct 26516366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 41277398 - 41277454
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    |||||| |||||||||| || ||||||| |||||| |||||||| ||||||||||||    
T  41277398 atagcttatgaaaacaacttttaacttatatgaaaacagtttgactttattttatct 41277454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 183
Target Start/End: Complemental strand, 36539758 - 36539675
Alignment:
Q  100 aaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcacttatat 183  Q
    ||||||| ||||| |||| |||||| ||| |||| |||||||||||| | | | || ||||||||||  |||||||||||||||    
T  36539758 aaaacaacttatagcttatatgaaaacaggttgactttattttatcttttgataaacaaatagcttacacataagcacttatat 36539675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 15003545 - 15003618
Alignment:
Q  73 tccataagctatctagcatagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    |||||||||| ||| | |||||| |||||||| | ||||| |||| |||||   ||||||||||||||||||||    
T  15003545 tccataagctctcttggatagcttatgaaaaccacttatagcttatatgaagagagtttgattttattttatct 15003618  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 3951883 - 3951935
Alignment:
Q  131 tgattttattttatctgtagttgaataaatagcttatgcataagcacttatat 183  Q
    |||||| ||||||||| | |||  ||||||||||||| |||||||||||||||    
T  3951883 tgatttcattttatcttttgttatataaatagcttattcataagcacttatat 3951935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 9215959 - 9215903
Alignment:
Q  77 taagctatctagcatagctaatgaaaacaatttataacttaaatgaaatcagtttga 133  Q
    |||||||||||| ||| ||||||||||||  ||| ||||||||||||| || |||||    
T  9215959 taagctatctaggataactaatgaaaacagcttacaacttaaatgaaaacaatttga 9215903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 19177492 - 19177408
Alignment:
Q  99 gaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcacttatat 183  Q
    |||||||| ||||| |||| |||||| ||||| || || |||||||||   |||| | |||||| |||| |||||||||||||||    
T  19177492 gaaaacaacttatagcttatatgaaaacagttagacttaattttatcttctgttgtagaaatagtttatacataagcacttatat 19177408  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 36639544 - 36639488
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    |||||| ||||||||| | ||||||||  |||||| || ||||||||||||||||||    
T  36639544 atagcttatgaaaacagtctataacttgtatgaaaacattttgattttattttatct 36639488  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 184
Target Start/End: Complemental strand, 28933857 - 28933752
Alignment:
Q  79 agctatctagcatagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcact 178  Q
    |||| ||||| |||||| ||||||||||||||||||||||||||||  | |||||||| ||||||||| | |||  ||||||||||||| ||| ||||||    
T  28933857 agctctctaggatagcttatgaaaacaatttataacttaaatgaaaataatttgatttgattttatcttttgttatataaatagcttatacatgagcact 28933758  T
Q  179 tatata 184  Q
    ||||||    
T  28933757 tatata 28933752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 14666562 - 14666514
Alignment:
Q  98 tgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    ||||||||| |||||||||| ||||||||||||||| ||||||||||||    
T  14666562 tgaaaacaacttataacttatatgaaatcagtttgactttattttatct 14666514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 11344340 - 11344426
Alignment:
Q  98 tgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcacttatata 184  Q
    ||||||||||||||| |||  |||||| || ||||| ||| |||||||| | |||  | ||||| ||||||||||||||||||||||    
T  11344340 tgaaaacaatttatagcttgtatgaaaacaatttgactttcttttatcttttgttatagaaatatcttatgcataagcacttatata 11344426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 37053616 - 37053562
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttat 144  Q
    |||||||||||||| || |||||||||| |||||| |||||||| ||||||||||    
T  37053616 atagctaatgaaaaaaacttataacttatatgaaaacagtttgactttattttat 37053562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 180
Target Start/End: Original strand, 18962086 - 18962176
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcactta 180  Q
    |||||| ||||||| | |||||| |||| |||||| |||||| | |||||||||||| | |||  | |||||||| || ||||||||||||    
T  18962086 atagcttatgaaaatagtttatagcttatatgaaaacagtttaactttattttatcttttgttataaaaatagctaatacataagcactta 18962176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 183
Target Start/End: Original strand, 28803537 - 28803647
Alignment:
Q  73 tccataagctatctagcatagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcata 172  Q
    |||||||||| || || |||| | | |||||||| || || |||| ||||||||||||||| |||||||||||| | |||    ||||| |||||  |||    
T  28803537 tccataagctctccaggatagtttaagaaaacaacttgtagcttatatgaaatcagtttgactttattttatcttttgttatcgaaataacttatatata 28803636  T
Q  173 agcacttatat 183  Q
    |||||||||||    
T  28803637 agcacttatat 28803647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 3673829 - 3673736
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcacttatat 183  Q
    |||||||||||||| || |||||||||| |||||| || ||| | |||||||||| | | |||  | ||||| || || |||||||||||||||    
T  3673829 atagctaatgaaaaaaacttataacttatatgaaaacaatttaactttattttatattttgttatagaaataactaatacataagcacttatat 3673736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 14277941 - 14278034
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagttt-gattttattttatctgtagttgaataaatagcttatgcataagcacttata 182  Q
    ||||||| |||||||||  ||||||||| |||||| |||||| || ||||||| || | |||||  | |||||| |||| ||||||||||||||    
T  14277941 atagctagtgaaaacaacatataacttatatgaaaacagttttgactttatttaatgtttagttatagaaatagtttatacataagcacttata 14278034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 33942165 - 33942116
Alignment:
Q  97 atgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    |||||||||| ||||| |||| |||||| |||||||| ||||||||||||    
T  33942165 atgaaaacaacttatagcttacatgaaaacagtttgactttattttatct 33942116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 5043608 - 5043664
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    |||||| |||||||||| || || |||| |||||| |||||||| ||||||||||||    
T  5043608 atagcttatgaaaacaacttctagcttatatgaaaacagtttgactttattttatct 5043664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 11513920 - 11513864
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    |||||| |||||||||| ||||| |||| |||||| || ||||| ||||||||||||    
T  11513920 atagcttatgaaaacaacttatagcttatatgaaaacaatttgactttattttatct 11513864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 33944621 - 33944573
Alignment:
Q  96 aatgaaaacaatttataacttaaatgaaatcagtttgattttattttat 144  Q
    ||||||||||||||||| |||| |||||| || ||||| ||||||||||    
T  33944621 aatgaaaacaatttatagcttatatgaaaacaatttgactttattttat 33944573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 36863673 - 36863729
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    |||||| ||||||||||||||||||||| || |||   |||||| ||||||||||||    
T  36863673 atagcttatgaaaacaatttataacttatataaaaattgtttgactttattttatct 36863729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 28340427 - 28340521
Alignment:
Q  73 tccataagctatctagcatagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttat 167  Q
    |||||||||| || |||||||||  ||||||||| |||||||||| |||||| |||||||| ||||||||||   | |||||| |||||||||||    
T  28340427 tccataagctctccagcatagcttctgaaaacaacttataacttacatgaaaacagtttgactttattttattgtttgttgaagaaatagcttat 28340521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 5006558 - 5006613
Alignment:
Q  91 tagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    ||||| |||||||||||||||| |||| |||||| |||||||| ||||||||||||    
T  5006558 tagcttatgaaaacaatttataccttatatgaaaacagtttgactttattttatct 5006613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 3610774 - 3610881
Alignment:
Q  76 ataagctatctagcatagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagc 175  Q
    ||||||| ||||| |||| | | |||||||| ||||| |||| |  ||| |||||||  || ||||||||| | |||| | ||||||||||| |||||||    
T  3610774 ataagctctctaggatagtttacgaaaacaacttatagcttataccaaaacagtttgccttcattttatcttttgttgtagaaatagcttatacataagc 3610873  T
Q  176 acttatat 183  Q
    ||||||||    
T  3610874 acttatat 3610881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 27548302 - 27548193
Alignment:
Q  73 tccataagctatctagcatagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcata 172  Q
    |||||||| |||| |  |||||| |||||||||  ||||| ||||||||||| || || || |||||||||||| | | | |  |||||||||||  |||    
T  27548302 tccataagttatccaagatagcttatgaaaacagcttatagcttaaatgaaaacaattagactttattttatcttttgctaaggaaatagcttatagata 27548203  T
Q  173 agcacttata 182  Q
    ||||||||||    
T  27548202 agcacttata 27548193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 45593788 - 45593860
Alignment:
Q  111 taacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcacttatat 183  Q
    ||||||| |||||| |||||||| |||||||||| | | |||  | ||||||||||| |||||||| ||||||    
T  45593788 taacttatatgaaaacagtttgactttattttatgttttgttacagaaatagcttatacataagcatttatat 45593860  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 38462320 - 38462210
Alignment:
Q  73 tccataagctatctagcatagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcata 172  Q
    |||||||||||||| | |||||| ||||||||| |||||| | || |||||| |||||||| |||||||||||| | | |  | |||||||||||  |||    
T  38462320 tccataagctatcttggatagcttatgaaaacagtttatagcatatatgaaaacagtttgactttattttatcttttggtatagaaatagcttataaata 38462221  T
Q  173 agcacttatat 183  Q
    | |||||||||    
T  38462220 aacacttatat 38462210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 16790443 - 16790497
Alignment:
Q  129 tttgattttattttatctgtagttgaataaatagcttatgcataagcacttatat 183  Q
    |||||||||||||||||||| |||  | ||||||||||| |||||||||||||||    
T  16790443 tttgattttattttatctgttgttataaaaatagcttatacataagcacttatat 16790497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 19679583 - 19679527
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    |||||| |||||||||| ||||| |||| |||||||||||| ||||||| |||||||    
T  19679583 atagctgatgaaaacaacttatatcttatatgaaatcagttcgattttagtttatct 19679527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 31337435 - 31337505
Alignment:
Q  76 ataagctatctagcatagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    ||||||| |||||  ||||| ||||| |||| |||||||||| || ||| |||||||| ||||||||||||    
T  31337435 ataagctttctagattagcttatgaatacaacttataacttatataaaaacagtttgactttattttatct 31337505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 180
Target Start/End: Complemental strand, 42039180 - 42039091
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcactta 180  Q
    ||||||||||||||||| |||||||| | |||||| || | ||| |||||||||| | | |||  | ||||||||||| ||||||||||||    
T  42039180 atagctaatgaaaacaacttataactcatatgaaacca-tctgactttattttattttttgttacagaaatagcttatacataagcactta 42039091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 48397666 - 48397612
Alignment:
Q  92 agctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    ||||||||||||||| ||||| ||||||| ||| || ||||| ||||||||||||    
T  48397666 agctaatgaaaacaacttatagcttaaataaaaacaatttgactttattttatct 48397612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 20192683 - 20192744
Alignment:
Q  119 atgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcactta 180  Q
    |||||| | |||||| |||||||||||| | |||  ||||||||||||| ||||||||||||    
T  20192683 atgaaaactgtttgactttattttatcttttgttatataaatagcttatacataagcactta 20192744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 2201150 - 2201094
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    ||||||||||||||||  ||||| |||| |||||| |||||||| ||| ||||||||    
T  2201150 atagctaatgaaaacagcttatagcttatatgaaaacagtttgactttgttttatct 2201094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 44374721 - 44374785
Alignment:
Q  119 atgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcacttatat 183  Q
    |||||| || ||||| |||||||||||| | ||| || | ||||||||| |||||||||||||||    
T  44374721 atgaaaacaatttgactttattttatcttttgttaaagatatagcttatacataagcacttatat 44374785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 1730906 - 1730825
Alignment:
Q  97 atgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcactt 179  Q
    ||||||| || |||||||||| ||||||| ||||||| |||||||||||| | ||| || ||||||||||| |||||||||||    
T  1730906 atgaaaataacttataacttacatgaaat-agtttgactttattttatctttggttaaaaaaatagcttatacataagcactt 1730825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 40304087 - 40304188
Alignment:
Q  74 ccataagctatctagcatagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataa 173  Q
    |||||| |||||||| |||| || ||||||||  |||||||||| |||||| || | |||||||||||||||| | |||  ||||||||||||| | |||    
T  40304087 ccataaactatctaggatagtta-tgaaaacagcttataacttatatgaaaacaatgtgattttattttatcttttgttatataaatagcttatacctaa 40304185  T
Q  174 gca 176  Q
    |||    
T  40304186 gca 40304188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 46980184 - 46980270
Alignment:
Q  97 atgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcacttatat 183  Q
    ||||||||||||||||||||| |||||| |||||||  |||||||||||| | | |  | ||| | |||||||||| ||||||||||    
T  46980184 atgaaaacaatttataacttatatgaaaacagtttgtctttattttatcttttgatataaaaacaacttatgcatatgcacttatat 46980270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 10581125 - 10581180
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatc 145  Q
    |||||| |||||||||| ||||| |||||||||||  ||||||| |||||||||||    
T  10581125 atagcttatgaaaacaacttatagcttaaatgaaaaaagtttgactttattttatc 10581180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 5150959 - 5150905
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttat 144  Q
    |||||| |||||||||| ||| |||||||||||||  ||||||| ||||||||||    
T  5150959 atagcttatgaaaacaaattacaacttaaatgaaaatagtttgactttattttat 5150905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 27738210 - 27738284
Alignment:
Q  72 atccataagctatctagcatagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    ||||||||||| ||  | |||||| |||||||||| ||||| |||| |||||| || ||||| ||||||||||||    
T  27738210 atccataagctctcctgtatagcttatgaaaacaaattatagcttatatgaaaacaatttgactttattttatct 27738284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 17422993 - 17423041
Alignment:
Q  97 atgaaaacaatttataacttaaatgaaatcagtttgattttattttatc 145  Q
    |||||||||| ||||| |||| |||||||||| |||| |||||||||||    
T  17422993 atgaaaacaacttatagcttatatgaaatcagcttgactttattttatc 17423041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 43029433 - 43029544
Alignment:
Q  73 tccataagctatctagcatagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcata 172  Q
    |||||||||| |  || |||||| ||||||| |  | |||||||| | |||| |||||||| |||||||||||| | |||| | |||||| |||| ||||    
T  43029433 tccataagctttaaagaatagcttatgaaaatacctcataacttataggaaa-cagtttgaatttattttatcttttgttgtagaaataggttatacata 43029531  T
Q  173 agcacttatatat 185  Q
    |||||| ||||||    
T  43029532 agcactcatatat 43029544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 48830124 - 48830180
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    |||||| ||||||||| |||||| |||| ||||||  ||||||| ||||||||||||    
T  48830124 atagcttatgaaaacagtttatagcttatatgaaaatagtttgactttattttatct 48830180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 34770920 - 34770858
Alignment:
Q  84 tctagcatagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    ||||| |||||| |||||||||| ||||| ||||||||||| || ||||| ||||||||||||    
T  34770920 tctaggatagcttatgaaaacaacttatagcttaaatgaaaacaatttgactttattttatct 34770858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 10727233 - 10727126
Alignment:
Q  75 cataagctatctagcatagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataag 174  Q
    |||||||| | ||| |||||| || ||||||| ||||||||||  ||||| || ||||| ||||||| |||| | | |  | ||||||||||||||||||    
T  10727233 cataagctttttagaatagcttat-aaaacaacttataacttatgtgaaaacactttgaatttatttcatcttttgctatagaaatagcttatgcataag 10727135  T
Q  175 cacttatat 183  Q
    |||||||||    
T  10727134 cacttatat 10727126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 38036160 - 38036252
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcacttata 182  Q
    ||||||||| |||||| |||||| |||| |  ||| || ||||| |||||||||| | | ||| ||||||||| |||| ||||||||||||||    
T  38036160 atagctaatcaaaacagtttatagcttacacaaaaacaatttgaatttattttattttttgttaaataaatagtttatacataagcacttata 38036252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 6864507 - 6864562
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatc 145  Q
    |||||| |||||||||| |||||||||| ||||||  ||||||| |||||||||||    
T  6864507 atagcttatgaaaacaacttataacttacatgaaaatagtttgactttattttatc 6864562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 2093301 - 2093245
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    ||||||||||||||||| ||||| |||||| |||| |  ||||| ||||||||||||    
T  2093301 atagctaatgaaaacaacttatagcttaaaagaaaaccatttgactttattttatct 2093245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 26370971 - 26370915
Alignment:
Q  129 tttgattttattttatctgtagttgaataaatagcttatgcataagcacttatatat 185  Q
    ||||| |||||||||||| | |||| | ||||||||| |||||||| ||||||||||    
T  26370971 tttgactttattttatcttttgttgtaaaaatagcttgtgcataagtacttatatat 26370915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 4006736 - 4006645
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcacttat 181  Q
    |||||| |||||||||| ||||| |||| || ||| || ||||| |||||||||||  | |||  | ||||| |||||||||||||||||||    
T  4006736 atagcttatgaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttatagaaatatcttatgcataagcacttat 4006645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 10452419 - 10452501
Alignment:
Q  101 aaacaatttataacttaaatgaaatcagtttgattttattttatctgtagttgaataaatagcttatgcataagcacttatat 183  Q
    |||||| ||||| |||| ||||||  |||||||||||||||||| | | |||  | ||||||||||| |||||||||| ||||    
T  10452419 aaacaacttatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagcttatacataagcactgatat 10452501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 7148640 - 7148595
Alignment:
Q  139 ttttatctgtagttgaataaatagcttatgcataagcacttatata 184  Q
    |||||||| |||||| | ||||||||||| ||||||||||||||||    
T  7148640 ttttatctttagttgtagaaatagcttatacataagcacttatata 7148595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 1403018 - 1402962
Alignment:
Q  90 atagctaatgaaaacaatttataacttaaatgaaatcagtttgattttattttatct 146  Q
    |||||| |||||||||||||||| |||| ||||||  ||||| | ||||||||||||    
T  1403018 atagcttatgaaaacaatttatagcttatatgaaaatagtttaactttattttatct 1402962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 1159 - 1215
Alignment:
Q  127 agtttgattttattttatctgtagttgaataaatagcttatgcataagcacttatat 183  Q
    ||||||| |||||||||||| | |||  | ||||||||||| |||||||||||||||    
T  1159 agtttgactttattttatcttttgttatagaaatagcttatacataagcacttatat 1215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 2816 - 2760
Alignment:
Q  127 agtttgattttattttatctgtagttgaataaatagcttatgcataagcacttatat 183  Q
    ||||||| |||||||||||| | |||  | ||||||||||| |||||||||||||||    
T  2816 agtttgactttattttatcttttgttatagaaatagcttatacataagcacttatat 2760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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