View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10326_low_4 (Length: 392)
Name: NF10326_low_4
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10326_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 20 - 375
Target Start/End: Complemental strand, 34320080 - 34319725
Alignment:
| Q |
20 |
tgttatcaatgaaagaaagtggaaaaattctgaggtgagtaggagttggtgatgaaggtttgatggtttctctagaaagtaattcaatttccat--ggta |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
34320080 |
tgttatcaatgaaagaaagtggataaattctgaggtgagtaggagttggtgatgaaggtttgatggtttctctagaaattaattcaatttccatatggta |
34319981 |
T |
|
| Q |
118 |
tttgattggctctacaactgattaatattctcactagtacaatataatttatgctcactggtatatattgattgaatggattgccatacacatagcataa |
217 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34319980 |
tttgattggctcaacaactgattaatattctcactagtacaat-----ttatgctcactggtatat--tgattgaatggattgccatacacatagcataa |
34319888 |
T |
|
| Q |
218 |
aagtgtttatatagtgtatgaattatgaacattaatacaagatcaagaccagtttaaagtatgaacacgcgtatattacatcactcacctttcaccaacg |
317 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34319887 |
a-gtgtttatatagtgtatgaattatgaacattaatacaagatcaagaccagtttaaagtatgaacacgcgtatattacatcacccacctttcaccaacg |
34319789 |
T |
|
| Q |
318 |
tg------ttagtattattattttagagaggaaaaggaaaacgttttcatttaatctcgaaaat |
375 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34319788 |
tgttagagttagtattattattttagagaggaaaaggaaaacgttttcatttaatctcgaaaat |
34319725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 34328980 - 34328891
Alignment:
| Q |
28 |
atgaaagaaagtggaaaaattctgaggtgagtaggagttggtgatgaaggtttgatggtttctctagaaagtaattcaatttccatggta |
117 |
Q |
| |
|
|||||||||||||| | ||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34328980 |
atgaaagaaagtgggtatattttgaggtgagaaggagttggtgatgaaggtttgatggtttctctagaaattaattcaatttccatggta |
34328891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 36622741 - 36622830
Alignment:
| Q |
28 |
atgaaagaaagtggaaaaattctgaggtgagtaggagttggtgatgaaggtttgatggtttctctagaaagtaattcaatttccatggta |
117 |
Q |
| |
|
||||||||||||||| ||| | | ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
36622741 |
atgaaagaaagtggataaagtttaaggtgagaaggagttggtgatgaaggtttgatggtttctcttgaaagtaattctatttccatggta |
36622830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 36634117 - 36634222
Alignment:
| Q |
31 |
aaagaaagtggaaaaattctgaggtgagtaggagttggtgatgaaggtttgatggtttctctagaaagtaattcaatttccatggtatttgattggctct |
130 |
Q |
| |
|
|||||||||||||||| | |||| |||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |||| |||| |
|
|
| T |
36634117 |
aaagaaagtggaaaaagtttgagatgag---gagttggtgatgaaggtttgatggtttctcttgaaagtaattcaatctccatggtaatcaattgcctct |
36634213 |
T |
|
| Q |
131 |
acaactgat |
139 |
Q |
| |
|
|||||||| |
|
|
| T |
36634214 |
ccaactgat |
36634222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 36627978 - 36628067
Alignment:
| Q |
28 |
atgaaagaaagtggaaaaattctgaggtgagtaggagttggtgatgaaggtttgatggtttctctagaaagtaattcaatttccatggta |
117 |
Q |
| |
|
||||| |||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
36627978 |
atgaatgaaagtgggtaaagtttgaggtgagatggagttggtgatgaaggtttgatggtttctcttgaaagtaattctatttccatggta |
36628067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 279
Target Start/End: Original strand, 36634312 - 36634372
Alignment:
| Q |
218 |
aagtgtttatatagtgtatgaattatgaacattaatacaagatcaagaccagtttaaagtat |
279 |
Q |
| |
|
|||||||||||||||| ||||||||| || | | |||||||||||||||||| |||||||| |
|
|
| T |
36634312 |
aagtgtttatatagtgcatgaattataaagct-attacaagatcaagaccagtctaaagtat |
36634372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 45307109 - 45307192
Alignment:
| Q |
30 |
gaaagaaagtggaaaaattctgaggtgagtaggagttggtgatgaaggtttgatggtttctctagaaagtaattcaatttccat |
113 |
Q |
| |
|
||||||||||||| | ||||| |||||| ||||||||| ||||||||||||||||||||||| |||| |||||| |||||||| |
|
|
| T |
45307109 |
gaaagaaagtggatatattctaaggtgatgaggagttggcgatgaaggtttgatggtttctctggaaactaattccatttccat |
45307192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University