View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10326_low_5 (Length: 346)
Name: NF10326_low_5
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10326_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 35035995 - 35035674
Alignment:
| Q |
1 |
gtttacagtgaaacactgtctagcaatttcccaactgctaacaactaaagttcgatgaacacctaaacgcacggtgaagatggctccgtatttgtcggct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35035995 |
gtttacagtgaaacactgtctagcaatttcccaactgctaacaactaaagttcgatgaacacctaaacgcactgtgaagatggctccgtatttgtcggct |
35035896 |
T |
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| Q |
101 |
aagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggccgattaaaggccaagcgccagcagcttcgggtggtggtggtggtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35035895 |
aagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggccgattaaaggccaagcgccagcagcttcgggtggt------ggtg |
35035802 |
T |
|
| Q |
201 |
tcattgaagctgcacccgtagtaatattgcttctacgtagtgaaaagagaacaaagagaagcaacaaaatgcagattgtaaatggcaatgttgatagtga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35035801 |
tcattgaagctgcacccgtagtaatattgcttctacgtagcgaaaagagaacaaagagaagcaacaaaatgcagattgtaaatggcaatgttgatagtga |
35035702 |
T |
|
| Q |
301 |
gaacaaattattcatcacatccataatt |
328 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
35035701 |
gaacaaattattcatcacatccataatt |
35035674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 35019741 - 35019629
Alignment:
| Q |
56 |
tgaacacctaaacgcacggtgaagatggctccgtatttgtcggctaagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggc |
155 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||| | |||| |||||||||||||||||||||||||||||| |
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| T |
35019741 |
tgaacacctaaacgaacggtgaagatgggtccgtatttgtcggctaagtttcctaaggtgacgtgaggtggttgggaaccacctaagaggtggaggtggc |
35019642 |
T |
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| Q |
156 |
cgattaaaggcca |
168 |
Q |
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||||||| ||||| |
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| T |
35019641 |
cgattaacggcca |
35019629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 33 - 210
Target Start/End: Complemental strand, 35029856 - 35029678
Alignment:
| Q |
33 |
aactgctaacaactaaagttcgatgaacacctaaacgcacggtgaag-atggctccgtatttgtcggctaagtttcccaaggtgatataaggttgttggg |
131 |
Q |
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||||||| |||||||| ||| |||||||||||||| ||||||||| |||| |||||||||||||||||||||||| ||||| | | |||| |||||| |
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| T |
35029856 |
aactgcttacaactaaggttttgtgaacacctaaacgaacggtgaaggatgggtccgtatttgtcggctaagtttcctaaggtaacgtgaggtggttggg |
35029757 |
T |
|
| Q |
132 |
aaccacctaagaggtggaggtggccgattaaaggccaagcgccagcagcttcgggtggtggtggtggtgtcattgaagc |
210 |
Q |
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| T |
35029756 |
acccacctaagaggtggaggtggccaattaacggccatgctccgctggcttctggcggcggtggtggtgtctttgaagc |
35029678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 35044156 - 35043986
Alignment:
| Q |
1 |
gtttacagtgaaacactgtctagcaatttcccaactgctaacaactaaagttcgatgaacacctaaacgcacggtgaagatggctccgtatttgtcggct |
100 |
Q |
| |
|
|||||||||||| || ||| | || ||||| |||||||| | ||||| ||| |||||||| ||||| | ||||||||| | ||||||||| |||||| |
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| T |
35044156 |
gtttacagtgaagcattgtttcgccatttcacaactgcttataactagtgttttgtgaacaccaaaacgaaaggtgaagataggtccgtatttatcggct |
35044057 |
T |
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| Q |
101 |
aagtttcccaaggtgatataaggttgttgggaaccacctaagaggtggaggtggccgattaaaggccaagc |
171 |
Q |
| |
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| || || ||||||| || |||| | ||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
35044056 |
agcttccctaaggtgacatgaggtggctgggatccacctaagaggtggaggtggccgatcaaaggccaagc |
35043986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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