View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10326_low_7 (Length: 314)

Name: NF10326_low_7
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10326_low_7
NF10326_low_7
[»] chr3 (26 HSPs)
chr3 (100-297)||(33995528-33995725)
chr3 (171-293)||(34001830-34001955)
chr3 (84-166)||(15462069-15462151)
chr3 (19-59)||(26107146-26107186)
chr3 (20-64)||(32580056-32580100)
chr3 (19-63)||(36674411-36674455)
chr3 (19-54)||(20832885-20832920)
chr3 (87-166)||(22318232-22318311)
chr3 (19-54)||(27240524-27240559)
chr3 (87-166)||(51715057-51715135)
chr3 (19-54)||(51738006-51738041)
chr3 (72-134)||(51203181-51203242)
chr3 (19-59)||(44906794-44906834)
chr3 (19-62)||(10660417-10660460)
chr3 (19-54)||(11431416-11431451)
chr3 (87-166)||(31219215-31219293)
chr3 (19-54)||(39842710-39842745)
chr3 (20-63)||(40897025-40897067)
chr3 (19-62)||(48379040-48379083)
chr3 (19-61)||(23753667-23753709)
chr3 (19-61)||(52618246-52618288)
chr3 (19-53)||(52810311-52810345)
chr3 (98-159)||(25838115-25838176)
chr3 (87-144)||(42110951-42111008)
chr3 (19-59)||(31646565-31646605)
chr3 (19-47)||(54628740-54628768)
[»] chr2 (18 HSPs)
chr2 (87-166)||(43050159-43050238)
chr2 (87-166)||(24510941-24511020)
chr2 (19-62)||(215508-215551)
chr2 (19-62)||(7026487-7026530)
chr2 (19-54)||(13833705-13833740)
chr2 (19-66)||(28844436-28844482)
chr2 (100-166)||(23046588-23046654)
chr2 (91-148)||(22417298-22417355)
chr2 (19-59)||(3463558-3463598)
chr2 (87-166)||(13019634-13019714)
chr2 (19-59)||(26788671-26788711)
chr2 (94-166)||(42346926-42346998)
chr2 (19-54)||(43078567-43078602)
chr2 (85-166)||(38308059-38308141)
chr2 (19-53)||(43825084-43825118)
chr2 (19-51)||(28740566-28740598)
chr2 (19-59)||(33135510-33135550)
chr2 (87-166)||(45203231-45203310)
[»] scaffold0071 (1 HSPs)
scaffold0071 (84-166)||(41-123)
[»] chr8 (20 HSPs)
chr8 (87-166)||(37507583-37507662)
chr8 (19-61)||(10295661-10295703)
chr8 (87-159)||(13818796-13818868)
chr8 (19-59)||(18959007-18959047)
chr8 (19-59)||(19718161-19718201)
chr8 (87-165)||(4656563-4656642)
chr8 (19-54)||(7466226-7466261)
chr8 (19-54)||(26855959-26855994)
chr8 (87-166)||(39555904-39555982)
chr8 (19-61)||(14782415-14782457)
chr8 (98-160)||(37325135-37325197)
chr8 (19-61)||(44726090-44726132)
chr8 (19-59)||(4031538-4031578)
chr8 (19-59)||(9288730-9288770)
chr8 (19-59)||(42306065-42306105)
chr8 (19-54)||(32497374-32497409)
chr8 (19-50)||(39467747-39467778)
chr8 (97-143)||(28376435-28376481)
chr8 (106-159)||(8757187-8757240)
chr8 (19-59)||(4402993-4403033)
[»] chr6 (10 HSPs)
chr6 (87-166)||(9929341-9929420)
chr6 (19-61)||(30385297-30385339)
chr6 (72-165)||(30525792-30525886)
chr6 (87-136)||(14713897-14713946)
chr6 (19-61)||(31895579-31895621)
chr6 (19-52)||(34759291-34759324)
chr6 (19-63)||(7497000-7497043)
chr6 (91-166)||(29389151-29389227)
chr6 (92-166)||(18075514-18075588)
chr6 (19-59)||(14262713-14262753)
[»] chr1 (17 HSPs)
chr1 (87-166)||(2749170-2749249)
chr1 (19-63)||(6312449-6312493)
chr1 (91-166)||(46939993-46940069)
chr1 (87-166)||(14874421-14874500)
chr1 (20-63)||(32589236-32589279)
chr1 (20-54)||(5495378-5495412)
chr1 (19-61)||(9322781-9322823)
chr1 (19-60)||(25612035-25612076)
chr1 (19-54)||(15835334-15835369)
chr1 (87-166)||(17339710-17339789)
chr1 (19-49)||(18798380-18798410)
chr1 (85-147)||(26614041-26614102)
chr1 (87-133)||(26614104-26614150)
chr1 (19-61)||(49230763-49230805)
chr1 (19-59)||(28387674-28387714)
chr1 (19-63)||(29219163-29219207)
chr1 (19-63)||(46327918-46327961)
[»] chr5 (11 HSPs)
chr5 (87-166)||(22017655-22017735)
chr5 (19-63)||(14000385-14000429)
chr5 (19-54)||(1152383-1152418)
chr5 (87-166)||(28503230-28503309)
chr5 (19-53)||(4240732-4240766)
chr5 (19-61)||(4550537-4550579)
chr5 (87-165)||(18401259-18401338)
chr5 (19-54)||(37013805-37013840)
chr5 (19-59)||(5948995-5949035)
chr5 (98-146)||(23994352-23994400)
chr5 (92-159)||(40491728-40491796)
[»] chr4 (14 HSPs)
chr4 (87-166)||(38303299-38303379)
chr4 (86-166)||(41945198-41945277)
chr4 (19-63)||(5441285-5441329)
chr4 (87-166)||(7257555-7257634)
chr4 (19-62)||(27767938-27767981)
chr4 (19-54)||(29649948-29649983)
chr4 (19-65)||(28483863-28483908)
chr4 (85-144)||(8938854-8938913)
chr4 (19-54)||(54341034-54341069)
chr4 (19-64)||(6334476-6334521)
chr4 (19-64)||(6335426-6335471)
chr4 (86-143)||(10156826-10156882)
chr4 (19-59)||(23987141-23987181)
chr4 (19-51)||(49835094-49835126)
[»] chr7 (16 HSPs)
chr7 (87-166)||(35356357-35356435)
chr7 (19-59)||(21067762-21067802)
chr7 (19-63)||(33892531-33892574)
chr7 (20-59)||(17001304-17001343)
chr7 (20-54)||(37973055-37973089)
chr7 (19-59)||(28342227-28342267)
chr7 (19-59)||(29893003-29893043)
chr7 (19-55)||(33382521-33382557)
chr7 (19-54)||(29615044-29615079)
chr7 (19-65)||(23101173-23101218)
chr7 (19-61)||(32883659-32883701)
chr7 (19-61)||(48117873-48117915)
chr7 (19-56)||(12963585-12963621)
chr7 (87-144)||(40172486-40172543)
chr7 (20-57)||(44257047-44257084)
chr7 (19-59)||(18838269-18838309)
[»] scaffold0306 (1 HSPs)
scaffold0306 (19-59)||(13810-13850)
[»] scaffold0152 (1 HSPs)
scaffold0152 (19-59)||(21477-21517)
[»] scaffold0110 (1 HSPs)
scaffold0110 (84-144)||(6475-6535)
[»] scaffold0922 (1 HSPs)
scaffold0922 (19-62)||(4083-4126)
[»] scaffold0492 (2 HSPs)
scaffold0492 (19-54)||(12054-12089)
scaffold0492 (19-53)||(11998-12032)
[»] scaffold0347 (1 HSPs)
scaffold0347 (19-54)||(14786-14821)
[»] scaffold0010 (2 HSPs)
scaffold0010 (23-62)||(233636-233675)
scaffold0010 (23-62)||(234484-234523)
[»] scaffold1504 (1 HSPs)
scaffold1504 (19-53)||(755-789)
[»] scaffold0543 (1 HSPs)
scaffold0543 (19-53)||(10452-10486)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 100 - 297
Target Start/End: Complemental strand, 33995725 - 33995528
Alignment:
Q  100 ttatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagatttcagggtgatttcaggcaaatgaaaaagctagag 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  33995725 ttatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattttaaggtgatttcaggcaaatgaaaaagctagag 33995626  T
Q  200 gatcatatttatagcttcggattcatattacttgaggtacttgttggaccttccattgctaaaagagaagcatctgtactaaatgcaacggtatatat 297  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33995625 gatgatatttatagcttcggattcatattacttgaggtacttgttggaccttccattgctaaaagagaagcatctgtactgaatgcaacggtatatat 33995528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 34001955 - 34001830
Alignment:
Q  171 gtgatttcaggcaaatgaaaaagctagaggatcatatttatagcttcggattcatattacttgaggtacttgttggaccttcca---ttgctaaaagaga 267  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||| |   |||||||||||||    
T  34001955 gtgatttcaggcaaatgaaaaagctagaggatgatatttatagctttggattcataatacttgaggcacttgttggaccttcaatgtttgctaaaagaga 34001856  T
Q  268 agcatctgtactaaatgcaacggtat 293  Q
    |||| |||| |||||||||| |||||    
T  34001855 agcagctgtgctaaatgcaatggtat 34001830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 15462151 - 15462069
Alignment:
Q  84 ccttatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    |||||||||||||| ||||||||||||||||  |||||| | |||||||||||||| ||||||| || ||| |||||||||||    
T  15462151 ccttatgcagttcgaattatagaatccaaacggcataaacaccccataaaaacctctaaaacacgtttaaatatttcagattt 15462069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 26107186 - 26107146
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  26107186 cttttaaaatctcatagaatcctaatccaatacatccccct 26107146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 32580100 - 32580056
Alignment:
Q  20 ttttaaaatctcatagaatcctaatccaatacatctccctaaata 64  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  32580100 ttttaaaatctcatagaatcctaatccaatacatccccttaaata 32580056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 36674411 - 36674455
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaat 63  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||    
T  36674411 cttttaaaatcccatagaatcctaatccaatacatccccctaaat 36674455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 20832920 - 20832885
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  20832920 cttttaaaatctcatagaatcctaatccaatacatc 20832885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 22318311 - 22318232
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    |||||||||||||||||||||| | || | |||||| ||| ||||||||||| |||||||  || |||||||||| ||||    
T  22318311 tatgcagttcggattatagaattcgaatagcataaacatctcataaaaaccttcaaaacatgttaaaacatttcatattt 22318232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 27240524 - 27240559
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  27240524 cttttaaaatctcatagaatcctaatccaatacatc 27240559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 51715135 - 51715057
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    ||||||||||| |  |||||||| || || |||||| | |||||||||||||||||||||| || |||||||||||||||    
T  51715135 tatgcagttcgaaaaatagaatcgaa-cagcataaacaccccataaaaacctccaaaacacgttaaaacatttcagattt 51715057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 51738006 - 51738041
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  51738006 cttttaaaatctcatagaatcctaatccaatacatc 51738041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 51203181 - 51203242
Alignment:
Q  72 gtttctcgtacaccttatgcagttcggattatagaatccaaacaacataaatatcccataaaa 134  Q
    ||||||||| | || ||||||||||| |||||||||||| ||||||||||||| |||||||||    
T  51203181 gtttctcgtgcgccatatgcagttcgaattatagaatccgaacaacataaata-cccataaaa 51203242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 44906794 - 44906834
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  44906794 cttttaaaatctcatagaatcctaatccaatatatccccct 44906834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 10660460 - 10660417
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaa 62  Q
    ||||||||||| ||||||||| |||||||||||||| |||||||    
T  10660460 cttttaaaatcccatagaatcttaatccaatacatccccctaaa 10660417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 11431451 - 11431416
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    |||||||||||| |||||||||||||||||||||||    
T  11431451 cttttaaaatcttatagaatcctaatccaatacatc 11431416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 31219293 - 31219215
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    |||||||||| ||||||||||||| |||  ||||||   ||||||||| |||||||||||   |||||||||||||||||    
T  31219293 tatgcagttcagattatagaatccgaacggcataaactccccataaaa-cctccaaaacatgctgaaacatttcagattt 31219215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 39842710 - 39842745
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    ||||||||||| ||||||||||||||||||||||||    
T  39842710 cttttaaaatcccatagaatcctaatccaatacatc 39842745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 40897067 - 40897025
Alignment:
Q  20 ttttaaaatctcatagaatcctaatccaatacatctccctaaat 63  Q
    |||||||||| |||||||||||||||||||||||| ||||||||    
T  40897067 ttttaaaatcccatagaatcctaatccaatacatc-ccctaaat 40897025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 48379083 - 48379040
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaa 62  Q
    |||||||||||  |||||||| ||||||||||||||||||||||    
T  48379083 cttttaaaatcctatagaatcataatccaatacatctccctaaa 48379040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 23753667 - 23753709
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaa 61  Q
    |||||||||||  ||||||||||||||||||||||| ||||||    
T  23753667 cttttaaaatcctatagaatcctaatccaatacatccccctaa 23753709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 52618246 - 52618288
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaa 61  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||    
T  52618246 cttttaaaatcccatagaatcctaatctaatacatccccctaa 52618288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 52810345 - 52810311
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacat 53  Q
    ||||||||||| |||||||||||||||||||||||    
T  52810345 cttttaaaatcccatagaatcctaatccaatacat 52810311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 25838176 - 25838115
Alignment:
Q  98 gattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacattt 159  Q
    ||||||||||||| ||||||||| ||| || ||||||||||| ||||||  |||||| ||||    
T  25838176 gattatagaatccgaacaacatagatagcctataaaaacctcaaaaacatgttgaaatattt 25838115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 42110951 - 42111008
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaa 144  Q
    ||||||| | |||||||||||| | ||| ||||||| | |||||||||||||||||||    
T  42110951 tatgcaggttggattatagaattcgaacgacataaacaccccataaaaacctccaaaa 42111008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 31646565 - 31646605
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    ||||||||||| |||||||||||||| ||||||||| ||||    
T  31646565 cttttaaaatcccatagaatcctaattcaatacatccccct 31646605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 54628768 - 54628740
Alignment:
Q  19 cttttaaaatctcatagaatcctaatcca 47  Q
    |||||||||||||||||||||||||||||    
T  54628768 cttttaaaatctcatagaatcctaatcca 54628740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 43050238 - 43050159
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    |||||||||||||||||||||||||||| ||||||||| ||  |||||||||||||||||| ||||||||||||||||||    
T  43050238 tatgcagttcggattatagaatccaaacgacataaataccctgtaaaaacctccaaaacacgttgaaacatttcagattt 43050159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 24511020 - 24510941
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    ||||||||||| |||||||||| |||||  |||||| ||||||||||||||||||||| || || ||| |||||||||||    
T  24511020 tatgcagttcgaattatagaattcaaacggcataaacatcccataaaaacctccaaaatacgtttaaatatttcagattt 24510941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 215508 - 215551
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaa 62  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  215508 cttttaaaatctcatagaatcctaatccaatacatccccctaaa 215551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 7026530 - 7026487
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaa 62  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  7026530 cttttaaaatctcatagaatcctaatccaatacatccccctaaa 7026487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 13833705 - 13833740
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  13833705 cttttaaaatctcatagaatcctaatccaatacatc 13833740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 28844482 - 28844436
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaatatt 66  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||    
T  28844482 cttttaaaatcccatagaatcctaatccaatacatc-ccctaaatatt 28844436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 23046654 - 23046588
Alignment:
Q  100 ttatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    ||||| ||| ||||||||||||| | |||||||||| ||||||||| |||| |||||||||| ||||    
T  23046654 ttatataatacaaacaacataaacaccccataaaaatctccaaaacgcattaaaacatttcaaattt 23046588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 22417355 - 22417298
Alignment:
Q  91 cagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacaca 148  Q
    |||||||||||||| |||||||||  |||||| | || ||||||||||||||||||||    
T  22417355 cagttcggattatataatccaaacggcataaacaccctataaaaacctccaaaacaca 22417298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 3463598 - 3463558
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  3463598 cttttaaaatctcatagaatcataatccaatacatccccct 3463558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 13019634 - 13019714
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaa-cacattgaaacatttcagattt 166  Q
    ||||||||| |||||||||||||| |||  |||||| |  ||||||||| || ||||| ||||||||||| ||||||||||    
T  13019634 tatgcagtttggattatagaatccgaacggcataaacactccataaaaatcttcaaaatcacattgaaacgtttcagattt 13019714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 26788711 - 26788671
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  26788711 cttttaaaatcccatagaatcctaatccaatacatccccct 26788671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 166
Target Start/End: Complemental strand, 42346998 - 42346926
Alignment:
Q  94 ttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    |||||||| || ||||| |||||||||||||  | |||||| ||||||||| || || |||||||||||||||    
T  42346998 ttcggattttataatcccaacaacataaatacgctataaaaccctccaaaatacgtttaaacatttcagattt 42346926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 43078602 - 43078567
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    ||||||||||| ||||||||||||||||||||||||    
T  43078602 cttttaaaatcccatagaatcctaatccaatacatc 43078567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 38308059 - 38308141
Alignment:
Q  85 cttatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaa-cacattgaaacatttcagattt 166  Q
    ||||||||||| | |||||||||||| |||  |||||| | || |||||||| | ||||| ||| ||||||||||||||||||    
T  38308059 cttatgcagtttgaattatagaatccgaacggcataaacaccctataaaaactttcaaaaacacgttgaaacatttcagattt 38308141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 43825118 - 43825084
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacat 53  Q
    ||||||||||||||||||||| |||||||||||||    
T  43825118 cttttaaaatctcatagaatcataatccaatacat 43825084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 28740566 - 28740598
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatac 51  Q
    ||||||||||| |||||||||||||||||||||    
T  28740566 cttttaaaatcccatagaatcctaatccaatac 28740598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 33135550 - 33135510
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    |||||||||||  ||||||||||||||||||||||| ||||    
T  33135550 cttttaaaatcctatagaatcctaatccaatacatccccct 33135510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 45203310 - 45203231
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctc-caaaacacattgaaacatttcagattt 166  Q
    ||||| ||||| ||| |||||||| ||| ||||||| ||||||| ||||||||  |||||||||||||| ||||| |||||    
T  45203310 tatgccgttcgaattttagaatccgaactacataaaaatcccat-aaaacctcgaaaaacacattgaaatatttcggattt 45203231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 41 - 123
Alignment:
Q  84 ccttatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    |||||||||||||| ||||||||||||||||  |||||| | |||||||||||||| ||||||| || ||| |||||||||||    
T  41 ccttatgcagttcgaattatagaatccaaacggcataaacaccccataaaaacctctaaaacacgtttaaatatttcagattt 123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 37507662 - 37507583
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    |||||| || || ||||||||||  ||| ||||||||| |||||||||||||||||||||| |||||||||||| |||||    
T  37507662 tatgcaatttggtttatagaatctgaacgacataaataccccataaaaacctccaaaacacgttgaaacatttcggattt 37507583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 10295661 - 10295703
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaa 61  Q
    ||||||||||| |||||||||||||||||||||||||||||||    
T  10295661 cttttaaaatcccatagaatcctaatccaatacatctccctaa 10295703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 13818868 - 13818796
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacattt 159  Q
    |||| |||||||||||||||||||||||  |||||| | |||||| ||||| ||||||||| |||||| ||||    
T  13818868 tatgtagttcggattatagaatccaaacttcataaacaccccatataaaccaccaaaacacgttgaaatattt 13818796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 18959007 - 18959047
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  18959007 cttttaaaatctcatagaatcctaatccaatacatccccct 18959047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 19718161 - 19718201
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  19718161 cttttaaaatcccatagaatcctaatccaatacatctccct 19718201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 4656563 - 4656642
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacc-tccaaaacacattgaaacatttcagatt 165  Q
    ||||||||| |||||||||||||| ||| |||||||||   |||||||||| |  |||||||||| ||||||||||||||    
T  4656563 tatgcagtttggattatagaatccgaacgacataaatacatcataaaaacctttaaaaacacattaaaacatttcagatt 4656642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 7466261 - 7466226
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  7466261 cttttaaaatctcatagaatcctaatccaatacatc 7466226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 26855994 - 26855959
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  26855994 cttttaaaatctcatagaatcctaatccaatacatc 26855959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 39555982 - 39555904
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    ||||||||| | |||||| ||||||| ||||||||| | || ||||||| ||| ||||||| ||||||||||||||||||    
T  39555982 tatgcagtttgaattatataatccaa-caacataaacaccctataaaaatctcaaaaacacgttgaaacatttcagattt 39555904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 14782415 - 14782457
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaa 61  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  14782415 cttttaaaatcccatagaatcctaatccaatacatccccctaa 14782457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 37325197 - 37325135
Alignment:
Q  98 gattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttc 160  Q
    ||||||||||| ||||  ||||||| ||||||| |||||||||||||||| || |||||||||    
T  37325197 gattatagaattcaaatgacataaacatcccattaaaacctccaaaacacgttaaaacatttc 37325135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 44726090 - 44726132
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaa 61  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  44726090 cttttaaaatcccatagaatcctaatccaatacatccccctaa 44726132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 4031538 - 4031578
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  4031538 cttttaaaatcccatagaatcctaatccaatacatccccct 4031578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 9288730 - 9288770
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    ||||||||||||||||||||| |||||||||||||| ||||    
T  9288730 cttttaaaatctcatagaatcataatccaatacatccccct 9288770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 42306065 - 42306105
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  42306065 cttttaaaatcacatagaatcctaatccaatacatccccct 42306105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 32497409 - 32497374
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    ||||||||||| ||||||||||||||||||||||||    
T  32497409 cttttaaaatcccatagaatcctaatccaatacatc 32497374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 39467747 - 39467778
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaata 50  Q
    ||||||||||||||||||||||||||||||||    
T  39467747 cttttaaaatctcatagaatcctaatccaata 39467778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 28376481 - 28376435
Alignment:
Q  97 ggattatagaatccaaacaacataaatatcccataaaaacctccaaa 143  Q
    |||||||| ||| | ||||||||||||||||||||||||||| ||||    
T  28376481 ggattataaaattcgaacaacataaatatcccataaaaaccttcaaa 28376435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 8757187 - 8757240
Alignment:
Q  106 aatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacattt 159  Q
    |||||||||  ||| |||| |||||||||||||| ||||||||| |||||||||    
T  8757187 aatccaaacggcattaataccccataaaaacctcgaaaacacatggaaacattt 8757240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 4403033 - 4402993
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    |||||||||||||||| |||| |||||||||||||| ||||    
T  4403033 cttttaaaatctcatataatcataatccaatacatccccct 4402993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 9929420 - 9929341
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    |||||||||||||||||||||| | |||  |||||| | | |||||||||||||||||||| |||||| |||||||||||    
T  9929420 tatgcagttcggattatagaattcgaacgtcataaacacctcataaaaacctccaaaacacgttgaaagatttcagattt 9929341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 30385297 - 30385339
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaa 61  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  30385297 cttttaaaatctcatagaatcctaatccaatacatccccctaa 30385339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 30525792 - 30525886
Alignment:
Q  72 gtttctcgtacaccttatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctcc-aaaacacattgaaacatttcagatt 165  Q
    |||||||| || || |||||| || |||||||||||||| |||  |||||| ||| ||||||||||||| ||||||| |||||||||||| ||||    
T  30525792 gtttctcgcacgccctatgcaatttggattatagaatccgaacggcataaacatctcataaaaacctccaaaaacacgttgaaacatttcggatt 30525886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 14713946 - 14713897
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaac 136  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||||||||    
T  14713946 tatgcagtttggattatagaatccgaacaacataaatgtcccataaaaac 14713897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 31895621 - 31895579
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaa 61  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  31895621 cttttaaaatcccatagaatcctaatccaatacatccccctaa 31895579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 34759291 - 34759324
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaataca 52  Q
    ||||||||||||||||||||||||||||||||||    
T  34759291 cttttaaaatctcatagaatcctaatccaataca 34759324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 7497043 - 7497000
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaat 63  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||    
T  7497043 cttttaaaatctcatagaattctaatccaatacatc-ccctaaat 7497000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 29389151 - 29389227
Alignment:
Q  91 cagttcggattatagaatccaaacaacataaatatcccataaaaacc-tccaaaacacattgaaacatttcagattt 166  Q
    |||||||||||||| ||||| |||| |||||| | || ||||||||| || ||||||| |||||||||||| |||||    
T  29389151 cagttcggattataaaatccgaacagcataaacacccaataaaaaccttcaaaaacacgttgaaacatttcggattt 29389227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 18075514 - 18075588
Alignment:
Q  92 agttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    ||||||||||||||||||  ||| | ||||| | |||||||||||| |||||| || || ||| |||||||||||    
T  18075514 agttcggattatagaatctgaacgaaataaacaccccataaaaaccaccaaaagacgttaaaatatttcagattt 18075588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 14262713 - 14262753
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    ||||||||||| | |||||||||||||||||||||| ||||    
T  14262713 cttttaaaatcccgtagaatcctaatccaatacatccccct 14262753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 2749170 - 2749249
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    |||||| || |||||||||||||| |||| |||||||  |||||||||||||||||||||  |||||||||||| |||||    
T  2749170 tatgcaatttggattatagaatccgaacaccataaatgccccataaaaacctccaaaacaagttgaaacatttcggattt 2749249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 6312493 - 6312449
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaat 63  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||    
T  6312493 cttttaaaatcccatagaatcctaatccaatacatccccctaaat 6312449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 46940069 - 46939993
Alignment:
Q  91 cagttcggattatagaatccaaacaacataaatatcccataaaaacc-tccaaaacacattgaaacatttcagattt 166  Q
    |||||||||||||||||||| ||||||||||| |  | ||||| ||| || |||||| |||||||||||||||||||    
T  46940069 cagttcggattatagaatccgaacaacataaacaatctataaagaccttcaaaaacatattgaaacatttcagattt 46939993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 14874500 - 14874421
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    |||||||||||||||||| | | ||||||||||||  ||||||||||||| | || ||||  || |||||||||||||||    
T  14874500 tatgcagttcggattatatagttcaaacaacataatcatcccataaaaacattcagaacatgttaaaacatttcagattt 14874421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 32589236 - 32589279
Alignment:
Q  20 ttttaaaatctcatagaatcctaatccaatacatctccctaaat 63  Q
    |||||||||||||||||||| |||||||||||||| ||||||||    
T  32589236 ttttaaaatctcatagaatcataatccaatacatccccctaaat 32589279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 5495378 - 5495412
Alignment:
Q  20 ttttaaaatctcatagaatcctaatccaatacatc 54  Q
    |||||||||||||||||||||||||||||||||||    
T  5495378 ttttaaaatctcatagaatcctaatccaatacatc 5495412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 9322781 - 9322823
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaa 61  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  9322781 cttttaaaatcccatagaatcctaatccaatacatccccctaa 9322823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 25612076 - 25612035
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctcccta 60  Q
    ||||||||||| |||||||||||||||||||||||| |||||    
T  25612076 cttttaaaatcccatagaatcctaatccaatacatcccccta 25612035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 15835334 - 15835369
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    ||||||||||| ||||||||||||||||||||||||    
T  15835334 cttttaaaatcccatagaatcctaatccaatacatc 15835369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 17339710 - 17339789
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    |||||||||| |||||||||| || ||| | |||||    | |||||||||||||||||||||| ||| |||||||||||    
T  17339710 tatgcagttcagattatagaacccgaacgaaataaactctctataaaaacctccaaaacacatttaaatatttcagattt 17339789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 49
Target Start/End: Complemental strand, 18798410 - 18798380
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaat 49  Q
    |||||||||||||||||||||||||||||||    
T  18798410 cttttaaaatctcatagaatcctaatccaat 18798380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 26614041 - 26614102
Alignment:
Q  85 cttatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacac 147  Q
    ||||||||||| |||||||||||||| |||||| |||  || |||| ||||||||||||||||    
T  26614041 cttatgcagtttggattatagaatccgaacaacgtaataattccat-aaaacctccaaaacac 26614102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 26614104 - 26614150
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaa 133  Q
    |||| ||||||||||||||||||||||| ||||||| | ||||||||    
T  26614104 tatgtagttcggattatagaatccaaactacataaaaaccccataaa 26614150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 49230805 - 49230763
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaa 61  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||    
T  49230805 cttttaaaatcccataaaatcctaatccaatacatccccctaa 49230763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 28387674 - 28387714
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    ||||||||||| |||||||||||||||||||| ||| ||||    
T  28387674 cttttaaaatcccatagaatcctaatccaataaatccccct 28387714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 29219207 - 29219163
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaat 63  Q
    ||||||||||  |||| ||||||||||||||||||| ||||||||    
T  29219207 cttttaaaattccatataatcctaatccaatacatccccctaaat 29219163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 46327961 - 46327918
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaat 63  Q
    ||||||||||| ||||||||||||||||||| |||| ||||||||    
T  46327961 cttttaaaatcccatagaatcctaatccaatgcatc-ccctaaat 46327918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 22017735 - 22017655
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctcc-aaaacacattgaaacatttcagattt 166  Q
    |||||||||||||||||||||||| ||   |||||| | ||||||||||||||| ||||| | ||||||||||||||||||    
T  22017735 tatgcagttcggattatagaatccgaatggcataaacaccccataaaaacctccaaaaacgcgttgaaacatttcagattt 22017655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 14000385 - 14000429
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaat 63  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||    
T  14000385 cttttaaaatcccatagaatcctaatccaatacatccccctaaat 14000429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 1152383 - 1152418
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  1152383 cttttaaaatctcatagaatcctaatccaatacatc 1152418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 28503230 - 28503309
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    ||||||||| |||||||| ||| | |||  ||||||||  |||||||||||||||||| || |||||| |||||||||||    
T  28503230 tatgcagtttggattataaaattcgaacggcataaatactccataaaaacctccaaaatacgttgaaatatttcagattt 28503309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 4240732 - 4240766
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacat 53  Q
    |||||||||||||||||||||||||||||||||||    
T  4240732 cttttaaaatctcatagaatcctaatccaatacat 4240766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 4550537 - 4550579
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaa 61  Q
    ||||||||||| |||||||||||||||||||||||| ||||||    
T  4550537 cttttaaaatcccatagaatcctaatccaatacatccccctaa 4550579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 18401338 - 18401259
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctcc-aaaacacattgaaacatttcagatt 165  Q
    ||||||||||||| |||||||| |||| | |||||| | | |||| | |||||| ||||||| |||||||||||||||||    
T  18401338 tatgcagttcggaatatagaattcaaaaagcataaacacctcatacagacctccaaaaacacgttgaaacatttcagatt 18401259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 37013840 - 37013805
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    ||||||||||||||||||||| ||||||||||||||    
T  37013840 cttttaaaatctcatagaatcataatccaatacatc 37013805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 5949035 - 5948995
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    ||||||||||| |||||||||||||||||| ||||| ||||    
T  5949035 cttttaaaatcccatagaatcctaatccaacacatccccct 5948995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 23994352 - 23994400
Alignment:
Q  98 gattatagaatccaaacaacataaatatcccataaaaacctccaaaaca 146  Q
    ||||||| ||||| ||||||||||| | ||||| |||||||||||||||    
T  23994352 gattatataatccgaacaacataaacaccccatgaaaacctccaaaaca 23994400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 40491796 - 40491728
Alignment:
Q  92 agttcggattatagaatccaaacaacataaatatcccataaaaacctcc-aaaacacattgaaacattt 159  Q
    |||| ||||||||||||| ||||  |||||| | | ||||||||||||| ||||||| |||||||||||    
T  40491796 agtttggattatagaatctaaacggcataaacacctcataaaaacctccaaaaacacgttgaaacattt 40491728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 38303379 - 38303299
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctcc-aaaacacattgaaacatttcagattt 166  Q
    |||| ||||||||||||||||| |||||  |||||||||   |||||||||||| ||||| ||||||||||||||||||||    
T  38303379 tatgaagttcggattatagaatacaaacggcataaatattgtataaaaacctccaaaaacgcattgaaacatttcagattt 38303299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 41945198 - 41945277
Alignment:
Q  86 ttatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    ||||||||||||||||||| ||||| ||| ||||||| | ||||||||||||| |||||||  || |||||||||||||||    
T  41945198 ttatgcagttcggattatataatccgaacgacataaaca-cccataaaaaccttcaaaacatgttaaaacatttcagattt 41945277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 5441329 - 5441285
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaat 63  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||    
T  5441329 cttttaaaatcccatagaatcctaatccaatacatccccctaaat 5441285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 7257555 - 7257634
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    |||| ||||||||||||||||||||||| ||||||    ||||  |||||||||||||||| | |||||||||| |||||    
T  7257555 tatgtagttcggattatagaatccaaacgacataatacccccaataaaacctccaaaacacgtcgaaacatttcggattt 7257634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 27767981 - 27767938
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaa 62  Q
    ||||||||||| |||||||||||||||||||||||| |||||||    
T  27767981 cttttaaaatcccatagaatcctaatccaatacatccccctaaa 27767938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 29649948 - 29649983
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    ||||||||||||||||||||||||||||||||||||    
T  29649948 cttttaaaatctcatagaatcctaatccaatacatc 29649983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 28483908 - 28483863
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaatat 65  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  28483908 cttttaaaatctcatagaatcctaattcaatacatc-ccctaaatat 28483863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 8938913 - 8938854
Alignment:
Q  85 cttatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaa 144  Q
    ||||||||||||||||| |||| |||||||  | |||| ||||||||||||| |||||||    
T  8938913 cttatgcagttcggattgtagagtccaaacggcgtaaacatcccataaaaacatccaaaa 8938854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 54341069 - 54341034
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    ||||||||||| ||||||||||||||||||||||||    
T  54341069 cttttaaaatcccatagaatcctaatccaatacatc 54341034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 6334476 - 6334521
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaata 64  Q
    ||||||||||||| |||||||||||||||| ||||| | |||||||    
T  6334476 cttttaaaatctcttagaatcctaatccaacacatccctctaaata 6334521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 6335426 - 6335471
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaata 64  Q
    ||||||||||||| |||||||||||||||| ||||| | |||||||    
T  6335426 cttttaaaatctcttagaatcctaatccaacacatccctctaaata 6335471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 10156882 - 10156826
Alignment:
Q  86 ttatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaa 143  Q
    |||||||||||||||| || |||||||||  |||||| ||||||| ||||||||||||    
T  10156882 ttatgcagttcggattctaaaatccaaactgcataaaaatcccat-aaaacctccaaa 10156826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 23987181 - 23987141
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    ||||||||||| |||| ||||||||||||||||||| ||||    
T  23987181 cttttaaaatcccataaaatcctaatccaatacatccccct 23987141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 49835094 - 49835126
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatac 51  Q
    ||||||||||| |||||||||||||||||||||    
T  49835094 cttttaaaatcccatagaatcctaatccaatac 49835126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 35356357 - 35356435
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattt 166  Q
    |||||||||||||||||| ||||| ||| || |||| | |||||||||||||||||||||| || ||||||||| |||||    
T  35356357 tatgcagttcggattatataatccgaacgacgtaaa-accccataaaaacctccaaaacacgttaaaacatttcggattt 35356435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 21067802 - 21067762
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  21067802 cttttaaaatctcatagaatcctaatccaatacatccccct 21067762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 33892531 - 33892574
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaat 63  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  33892531 cttttaaaatctcatagaatcctaatccaatacatc-ccctaaat 33892574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 17001304 - 17001343
Alignment:
Q  20 ttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  17001304 ttttaaaatctcatagaatcctaatccaatacatccccct 17001343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 37973055 - 37973089
Alignment:
Q  20 ttttaaaatctcatagaatcctaatccaatacatc 54  Q
    |||||||||||||||||||||||||||||||||||    
T  37973055 ttttaaaatctcatagaatcctaatccaatacatc 37973089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 28342267 - 28342227
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  28342267 cttttaaaatcccatagaatcctaatccaatacatccccct 28342227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 29893043 - 29893003
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    ||||||||||||||||||||||||||| |||||||| ||||    
T  29893043 cttttaaaatctcatagaatcctaatctaatacatccccct 29893003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 33382557 - 33382521
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatct 55  Q
    ||||||||||||||||||||||||||| |||||||||    
T  33382557 cttttaaaatctcatagaatcctaatctaatacatct 33382521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 29615044 - 29615079
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    ||||||||||||||||||||| ||||||||||||||    
T  29615044 cttttaaaatctcatagaatcataatccaatacatc 29615079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 23101218 - 23101173
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaatat 65  Q
    ||||||||||| |||||||||||||||| ||||||| ||||||||||    
T  23101218 cttttaaaatcccatagaatcctaatccgatacatc-ccctaaatat 23101173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 32883701 - 32883659
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaa 61  Q
    ||||||||||| ||||||||| |||||||||||||| ||||||    
T  32883701 cttttaaaatcccatagaatcataatccaatacatccccctaa 32883659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 48117873 - 48117915
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaa 61  Q
    ||||||||||| |||||||| ||||||||||||||| ||||||    
T  48117873 cttttaaaatcccatagaatactaatccaatacatccccctaa 48117915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 12963621 - 12963585
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctc 56  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  12963621 cttttaaaatctc-tagaatcctaatccaatacatctc 12963585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 40172486 - 40172543
Alignment:
Q  87 tatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaa 144  Q
    |||||| |||||||||||||||   ||||||||||| | || ||||||||||||||||    
T  40172486 tatgcaattcggattatagaatttgaacaacataaacacccaataaaaacctccaaaa 40172543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 57
Target Start/End: Original strand, 44257047 - 44257084
Alignment:
Q  20 ttttaaaatctcatagaatcctaatccaatacatctcc 57  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  44257047 ttttaaaatctcatcgaatcctaatccaataaatctcc 44257084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 18838309 - 18838269
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    |||||| |||| |||||||||||||||||||||||| ||||    
T  18838309 cttttataatcccatagaatcctaatccaatacatccccct 18838269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 13850 - 13810
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  13850 cttttaaaatctcatagaatcctaatccaatacatccccct 13810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 21477 - 21517
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccct 59  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  21477 cttttaaaatctcatagaatcctaatccaatacatccccct 21517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 6535 - 6475
Alignment:
Q  84 ccttatgcagttcggattatagaatccaaacaacataaatatcccataaaaacctccaaaa 144  Q
    ||||||||||||||||||||||||||| ||| |||||||   | |||||||||||| ||||    
T  6535 ccttatgcagttcggattatagaatccgaacgacataaacccctcataaaaacctctaaaa 6475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 4126 - 4083
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatctccctaaa 62  Q
    |||||||||||  ||||||||||||||||||||||| |||||||    
T  4126 cttttaaaatcctatagaatcctaatccaatacatccccctaaa 4083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 12054 - 12089
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    ||||||||||| ||||||||||||||||||||||||    
T  12054 cttttaaaatcccatagaatcctaatccaatacatc 12089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 12032 - 11998
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacat 53  Q
    ||||||||||| |||||||||||||||||||||||    
T  12032 cttttaaaatcccatagaatcctaatccaatacat 11998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 14821 - 14786
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacatc 54  Q
    |||||||||||||||||||||| |||||||||||||    
T  14821 cttttaaaatctcatagaatccaaatccaatacatc 14786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 233675 - 233636
Alignment:
Q  23 taaaatctcatagaatcctaatccaatacatctccctaaa 62  Q
    ||||||| |||||||||||||||||||||||| |||||||    
T  233675 taaaatcccatagaatcctaatccaatacatccccctaaa 233636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 62
Target Start/End: Complemental strand, 234523 - 234484
Alignment:
Q  23 taaaatctcatagaatcctaatccaatacatctccctaaa 62  Q
    ||||||| |||||||||||||||||||||||| |||||||    
T  234523 taaaatcccatagaatcctaatccaatacatccccctaaa 234484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1504 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1504
Description:

Target: scaffold1504; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 789 - 755
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacat 53  Q
    ||||||||||| |||||||||||||||||||||||    
T  789 cttttaaaatcccatagaatcctaatccaatacat 755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 10486 - 10452
Alignment:
Q  19 cttttaaaatctcatagaatcctaatccaatacat 53  Q
    ||||||||||| |||||||||||||||||||||||    
T  10486 cttttaaaatcccatagaatcctaatccaatacat 10452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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