View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10326_low_8 (Length: 305)
Name: NF10326_low_8
Description: NF10326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10326_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 41030743 - 41031019
Alignment:
| Q |
19 |
gatacgcataaggatcaa-gctatagtttgtagtttctattaaatcacggttgattggcatatgaacgcgagtatagtgagtgtggaactagtgaaatca |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41030743 |
gatacgcataaggatcaaagctatagtttgtagtttctattaaatcactgttgattggcatatgaacgcgagtatagtgagtgtggaactagtgaaatca |
41030842 |
T |
|
| Q |
118 |
aacatagaggctatcatacattttctcctttaatatgtgcaagctatatttacacttacaagttatagtatctttctttcttgtaacctcnnnnnnnaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41030843 |
aacatagaggctatcatacattttctcctttaatatgtgcaagctatatttacacttacaagttatagtatctttctttcttgtaacctctttttttaaa |
41030942 |
T |
|
| Q |
218 |
gtgaaataaatgtttgcttgcttttagttaagcatagtaatattaatattacagttgttctcttctttaatattcat |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41030943 |
gtgaaataaatgtttgcttgcttttagttaagcatagtaatattaatattacagttgttctcttctttaatattcat |
41031019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 138
Target Start/End: Original strand, 41036363 - 41036450
Alignment:
| Q |
48 |
tagtttctattaaatcacggttgattggcatatgaacgcgagtatagtgagtgtggaactagtgaaatcaaacatagaggctatcatacat |
138 |
Q |
| |
|
|||||||| ||||||||| || |||||||||||||| || || |||| |||||| || |||||| ||||||| |||||||||||||| |
|
|
| T |
41036363 |
tagtttctgttaaatcacagtcgattggcatatgaatgcaagaatagcgagtgtaga---tgtgaaactaaacatataggctatcatacat |
41036450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University