View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10327_high_11 (Length: 383)

Name: NF10327_high_11
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10327_high_11
NF10327_high_11
[»] chr6 (2 HSPs)
chr6 (87-249)||(7863966-7864129)
chr6 (87-179)||(4058995-4059087)
[»] chr4 (2 HSPs)
chr4 (87-249)||(9110256-9110419)
chr4 (110-246)||(7653898-7654034)
[»] chr3 (2 HSPs)
chr3 (87-228)||(20592984-20593125)
chr3 (87-153)||(45914028-45914094)
[»] chr7 (4 HSPs)
chr7 (87-246)||(40647109-40647268)
chr7 (1-86)||(9939993-9940078)
chr7 (90-168)||(45849595-45849673)
chr7 (87-179)||(11362005-11362097)
[»] chr5 (2 HSPs)
chr5 (87-189)||(21905804-21905906)
chr5 (156-246)||(22620184-22620274)
[»] chr2 (1 HSPs)
chr2 (87-153)||(19677722-19677788)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 87 - 249
Target Start/End: Complemental strand, 7864129 - 7863966
Alignment:
Q  87 cactagtataaaatacacttattaaatcaaggattttagatggattgctatccacatgacttaaaaagttgggtgtaaggaaagtttttaacttgtaatg 186  Q
    |||||||| |||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  7864129 cactagtacaaaatatacttattaaatcaaggattttaaatgggttgctatccacatgacttaaaaagctgggtgcaaggaaagtttttaacttgtaatg 7864030  T
Q  187 atattaaatcgtttgaacccatttaaaaactatttgtcaaaatt-aaagtttccaaaccaagtg 249  Q
    |||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||    
T  7864029 atattaaatcgtttgaccccattttaaaagtatttgtcaaaattcaaagtttccaaaccaagtg 7863966  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 4058995 - 4059087
Alignment:
Q  87 cactagtataaaatacacttattaaatcaaggattttagatggattgctatccacatgacttaaaaagttgggtgtaaggaaagtttttaact 179  Q
    |||||||| |||| |||||||||| ||| ||||||||| |||| ||| ||||||| |||||||||| | ||||||||||||||||||||||||    
T  4058995 cactagtacaaaaaacacttattacatctaggattttaaatgggttgttatccacctgacttaaaatgctgggtgtaaggaaagtttttaact 4059087  T

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Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 87 - 249
Target Start/End: Complemental strand, 9110419 - 9110256
Alignment:
Q  87 cactagtataaaatacacttattaaatcaaggattttagatggattgctatccacatgacttaaaaagttgggtgtaaggaaagtttttaacttgtaatg 186  Q
    |||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||||||    
T  9110419 cactagtacaaaatacacttattaaatcaaggattttaaatgggttgctatccacatgacttaaaaagctgggtgcagggaaagtttttaacttgtaatg 9110320  T
Q  187 atattaaatcgtttgaacccatttaaaaactatttgtcaaaatt-aaagtttccaaaccaagtg 249  Q
    ||||||||||  |||| ||||||||||||||||||||||||||| ||||||| |||||||||||    
T  9110319 atattaaatcagttgaccccatttaaaaactatttgtcaaaattcaaagttttcaaaccaagtg 9110256  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 110 - 246
Target Start/End: Complemental strand, 7654034 - 7653898
Alignment:
Q  110 aaatcaaggattttagatggattgctatccacatgacttaaaaagttgggtgtaaggaaagtttttaacttgtaatgatattaaatcgtttgaacccatt 209  Q
    ||||| ||||||||| |||| ||| |||||| |||| |||||||| ||||||||||||||||||||||||| ||||| |||||||| |||| | ||||||    
T  7654034 aaatctaggattttaaatgggttgttatccaaatgatttaaaaagctgggtgtaaggaaagtttttaacttctaatggtattaaattgttttatcccatt 7653935  T
Q  210 taaaaactatttgtcaaaattaaagtttccaaaccaa 246  Q
    |||||||||||| |||||||| ||  |||||||||||    
T  7653934 taaaaactatttatcaaaattcaaagttccaaaccaa 7653898  T

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Target: chr3 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 87 - 228
Target Start/End: Complemental strand, 20593125 - 20592984
Alignment:
Q  87 cactagtataaaatacacttattaaatcaaggattttagatggattgctatccacatgacttaaaaagttgggtgtaaggaaagtttttaacttgtaatg 186  Q
    |||||||| |||| |||||||||||||| ||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||  |||||    
T  20593125 cactagtacaaaaaacacttattaaatctaggattttaaatggcttgctatccacatgacttaaaaagctgggtgtaaggaaagtttttaactactaatg 20593026  T
Q  187 atattaaatcgtttgaacccatttaaaaactatttgtcaaaa 228  Q
    ||||||||| |||| | |||||||||||||||||| ||||||    
T  20593025 atattaaattgtttcaccccatttaaaaactatttatcaaaa 20592984  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 45914094 - 45914028
Alignment:
Q  87 cactagtataaaatacacttattaaatcaaggattttagatggattgctatccacatgacttaaaaa 153  Q
    |||||||| |||| |||||||||||||||  ||||||| |||| | ||||||||| ||| |||||||    
T  45914094 cactagtacaaaaaacacttattaaatcagagattttaaatgggtggctatccacctgatttaaaaa 45914028  T

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Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 87 - 246
Target Start/End: Complemental strand, 40647268 - 40647109
Alignment:
Q  87 cactagtataaaatacacttattaaatcaaggattttagatggattgctatccacatgacttaaaaagttgggtgtaaggaaagtttttaacttgtaatg 186  Q
    |||||||| |||| |||||||||||||| ||||||||| |||  |||||||||||||||||||||||| ||||||||| | || |||||||||| |||||    
T  40647268 cactagtacaaaaaacacttattaaatctaggattttaaatgagttgctatccacatgacttaaaaagctgggtgtaatggaaatttttaacttctaatg 40647169  T
Q  187 atattaaatcgtttgaacccatttaaaaactatttgtcaaaattaaagtttccaaaccaa 246  Q
    ||||||||| |||| | |||||||||||||||||| |||||||| ||  |||||||||||    
T  40647168 atattaaattgtttcaccccatttaaaaactatttatcaaaattcaaagttccaaaccaa 40647109  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 9939993 - 9940078
Alignment:
Q  1 ttagagttgtctaacatcacgtagatgtcttttaaatcaaagctataatacttactaagaacggagccaccacctcatagtgaggg 86  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9939993 ttagaattgtctaccatcacgtagatgtcttttaaatcaaagctataatacttactaaggacggagccaccacctcatagtgaggg 9940078  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 45849595 - 45849673
Alignment:
Q  90 tagtataaaatacacttattaaatcaaggattttagatggattgctatccacatgacttaaaaagttgggtgtaaggaa 168  Q
    ||||| |||| |||||||||||||| ||||||||| |||| |||||||||||| ||||||||||| |||||||||||||    
T  45849595 tagtacaaaaaacacttattaaatctaggattttaaatgggttgctatccacacgacttaaaaagctgggtgtaaggaa 45849673  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 87 - 179
Target Start/End: Original strand, 11362005 - 11362097
Alignment:
Q  87 cactagtataaaatacacttattaaatcaaggattttagatggattgctatccacatgacttaaaaagttgggtgtaaggaaagtttttaact 179  Q
    |||||||| |||| |||||||||| ||| ||||||||| |||| ||| ||||||| |||||||||| | |||||||| |||||||||||||||    
T  11362005 cactagtacaaaaaacacttattacatctaggattttaaatgggttgttatccacctgacttaaaatgctgggtgtagggaaagtttttaact 11362097  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 21905906 - 21905804
Alignment:
Q  87 cactagtataaaatacacttattaaatcaaggattttagatggattgctatccacatgacttaaaaagttgggtgtaaggaaagtttttaacttgtaatg 186  Q
    |||||||| |||| |||||||||||||| ||||||||| ||||  ||||||||||||||||||||||||| |||||||||||| |||||||||| |||||    
T  21905906 cactagtacaaaaaacacttattaaatctaggattttaaatgggatgctatccacatgacttaaaaagttaggtgtaaggaaaatttttaacttctaatg 21905807  T
Q  187 ata 189  Q
    |||    
T  21905806 ata 21905804  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 22620184 - 22620274
Alignment:
Q  156 tgggtgtaaggaaagtttttaacttgtaatgatattaaatcgtttgaacccatttaaaaactatttgtcaaaattaaagtttccaaaccaa 246  Q
    |||||||||| |||||||||||||| |||||||||||||| |||| | |||||||||||||||||| | |||||| ||  |||||||||||    
T  22620184 tgggtgtaagaaaagtttttaacttctaatgatattaaattgtttcatcccatttaaaaactatttattaaaatttaaagttccaaaccaa 22620274  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 19677788 - 19677722
Alignment:
Q  87 cactagtataaaatacacttattaaatcaaggattttagatggattgctatccacatgacttaaaaa 153  Q
    |||||||| |||| |||||||||||||||  ||||||| |||| | ||||||||| ||| |||||||    
T  19677788 cactagtacaaaaaacacttattaaatcagagattttaaatgggtggctatccacctgatttaaaaa 19677722  T

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