View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10327_high_15 (Length: 340)
Name: NF10327_high_15
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 2946186 - 2945862
Alignment:
| Q |
1 |
cattctaaatccaccgttcaatgacttccattcctcatttcttgccctccacactccattaaaaagggctagaaaatggagaacgaagactagtggaaac |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2946186 |
cattctaaatccaccgttcaataacttccattcctcatttcttgccctccacactccattaaaaagggctagaaaatggagaacgaagactagtggaaac |
2946087 |
T |
|
| Q |
101 |
gaaataacaaataaaaggatatacctatgattctatgaagtaggtacaaagttaatctaaaacattgtactttctaagagataactaactgcattgaatt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2946086 |
gaaataacaaataaaaagatatacctatgattctatgaagtaggtacaaagttaatctaaaacattgtactttctaagagataactaactgcattgaatt |
2945987 |
T |
|
| Q |
201 |
ggaactttctctactcagccccaggatcatataccaaaacttgtttgtgttttccataatttgcatgccttatcttatcatgcctcagatctttgatcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2945986 |
ggaactttctctactcagccccaggatcatataccaaaacttgtttgtgttttccataatttgcatgccttatcttatcatgcctcagatctttgatcag |
2945887 |
T |
|
| Q |
301 |
tcctgtagaagggtcctgttccttt |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2945886 |
tcctgtagaagggtcctgttccttt |
2945862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University