View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_high_16 (Length: 332)
Name: NF10327_high_16
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 885531 - 885821
Alignment:
| Q |
19 |
ttatgtacattaacaaaatgtaagatgaactagattttccccttttattaggccttgaaatgcataatccatatattccacatatagtaatagaaatact |
118 |
Q |
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| T |
885531 |
ttatgtacattaacaaaatgaaagatgaactagattttccccttttattaggccttgaaatgcataatccatatattccacatatagtaatagaaatact |
885630 |
T |
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| Q |
119 |
agttaacaaaaggtagaagcaattaatgcattcctacaaactctccctctccaactcattcatgtcatataattccaaacatttcgcacatcaattctca |
218 |
Q |
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| T |
885631 |
agttaacaaaaggtagaagcaattaatgcattcctacaaactctccctctccaactcattcatgtcatataattccaaacatttcgcacatcaattctca |
885730 |
T |
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| Q |
219 |
tatactccacacattatgtatatatacaaatatacacttcctctcatttctctcccactctttgtgtgatgtttggacaacacacaaagaga |
310 |
Q |
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| T |
885731 |
tatactccacacattatgtatatatac-aatatacacttcctctcatttctctcccactctttgtgtgatgtttggacaacacacatagaga |
885821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 1849107 - 1849159
Alignment:
| Q |
35 |
aatgtaagatgaactagattttc-cccttttattaggccttgaaatgcataat |
86 |
Q |
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| T |
1849107 |
aatgaaagatgaactagtttttttcccttatattaggccttgaaatgcataat |
1849159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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