View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_high_25 (Length: 254)
Name: NF10327_high_25
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 55336799 - 55337022
Alignment:
| Q |
13 |
agcagagagtgtaatcatgttaatgttgtttagaagtaggttgttccaattttgacgctgttcgcagatgtttttgtgcatttcaattctgtcagataca |
112 |
Q |
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| T |
55336799 |
agcagtgagtgtaatcatgttaatgttgtttagaagtaggttgttccaattttgacgctgttcgccgatgtttttgtgcatttcaattctgtcagataca |
55336898 |
T |
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| Q |
113 |
gaatctaagatagcatagagttgcacggtgttggagttattgattgtagaattggataaatcatggtgtaaattatgtgtcctattgatgacannnnnnn |
212 |
Q |
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| T |
55336899 |
gaatctaagatagcatagagttgcacggtgttggagttattgattgaagaattggataaatcatggtgtaaattatgtgtcctattgatgacattttttt |
55336998 |
T |
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| Q |
213 |
caagcaataatgaaggaactgagt |
236 |
Q |
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|||||||||||||||||||||||| |
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| T |
55336999 |
caagcaataatgaaggaactgagt |
55337022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 55331368 - 55331485
Alignment:
| Q |
20 |
agtgtaatcatgttaatgttgtttagaagtaggttgttccaattttgacgctgttcgcagatgtttttgtgcatttcaattctgtcagatacagaatcta |
119 |
Q |
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| T |
55331368 |
agtgtgatcatgttgatgttgtttagaagtaggttgttccaattctgtcgctgttggctgaggttgttgtgcatttcgattctgtcggatacagaatcta |
55331467 |
T |
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| Q |
120 |
agatagcatagagttgca |
137 |
Q |
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| T |
55331468 |
aaattgcatagagttgca |
55331485 |
T |
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