View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10327_high_26 (Length: 253)
Name: NF10327_high_26
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_high_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2946360 - 2946599
Alignment:
| Q |
1 |
caccctcacttccctagtaaggcaaactccagatcacagtttttaagtgactttaaattaagaggccgttattgttacttttgtggcttacgtaacaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2946360 |
caccctcacttccctagtaaggcaaactccagatcacagtttttaagtgactttaaattaagaggccgttattgttacttttgtggcttacgtaacaaaa |
2946459 |
T |
|
| Q |
101 |
atgttgcatttttgtcttgaaaaatgtcgaataattgagatgtcaagtctaaatttctaccatgagtcttccttgcaggttttgtgttctaatatgtagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2946460 |
atgttgcatttttgtcttgaaaaatgtcgaataattgagatgtcaagtctaaatttctaccatgagtctttcttgcaggttttgtgttctaatatgtagt |
2946559 |
T |
|
| Q |
201 |
tgtacattctgattcgtgcttcttttgatctttctctgtg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2946560 |
tgtacattctgattcgtgcttcttttgatctttctctgtg |
2946599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University