View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_high_34 (Length: 228)
Name: NF10327_high_34
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_high_34 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 25924350 - 25924154
Alignment:
| Q |
13 |
cagagatcattgaaggcgaaaggaaatgaatataccttattaacagttgggttatggataatttcattggtaatccaaattttttcatcaggaaattgtt |
112 |
Q |
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| T |
25924350 |
cagagatcattgaaggcgaaaggaaatgaatataccttattaacagttgggttatggataatttcattggtaatccaaattttttcatcaggaaattgtt |
25924251 |
T |
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| Q |
113 |
tcctggcttcataagcaatttgaacagccctctcaaccccccagcaaaatccaaaggattcggctagcatcacagtgacattaccccatgtatactc |
209 |
Q |
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| T |
25924250 |
tcctggcttcataagcaatttgaacagccctctcaaccccccagcaaaatccaaaggattcggctagcatcacagtgacattaccccatgtatactc |
25924154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 25946121 - 25945925
Alignment:
| Q |
13 |
cagagatcattgaaggcgaaaggaaatgaatataccttattaacagttgggttatggataatttcattggtaatccaaattttttcatcaggaaattgtt |
112 |
Q |
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| T |
25946121 |
cagagatcattaaaggtaataggaattgtatataccttattaacagttgggttgtggatgatttgattggtaatccaaattttgtgattaggaaactgtt |
25946022 |
T |
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| Q |
113 |
tcctggcttcataagcaatttgaacagccctctcaaccccccagcaaaatccaaaggattcggctagcatcacagtgacattaccccatgtatactc |
209 |
Q |
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| T |
25946021 |
ttctggcctcataagcaatctgaacagccttctcaactccccaacaaaagccaaaggcttcagctagcatcacagtgacattaccccatgtatactc |
25945925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 40805129 - 40805065
Alignment:
| Q |
48 |
cttattaacagttgggttatggataatttcattggtaatccaaattttttcatcaggaaattgtt |
112 |
Q |
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|||||||||| ||| ||| ||||| |||||||||||||||| |||||| | || ||||||||||| |
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| T |
40805129 |
cttattaacaattgtgttgtggatgatttcattggtaatcccaattttgtgattaggaaattgtt |
40805065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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