View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_high_41 (Length: 215)
Name: NF10327_high_41
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 46467863 - 46468049
Alignment:
| Q |
9 |
cgagtgagatgaagggaaagggtttgacggaagatagagtagtcgtgacaccaaaacgcgtcgttaccaaacctttatcttcgtcggagaaacactcgaa |
108 |
Q |
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| T |
46467863 |
cgagagagatggagggaaagggtttgacagaagatagagtagtcgtgacaccaaaacgcgtcgttaccaaacctttatcttcgtcggagaaacactcgaa |
46467962 |
T |
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| Q |
109 |
atccaccaccaccgtcgacgtcgttaccatgaaagcagcaggcggaggaacactctcaaaagaacaccaaagcgcaaagaagctatt |
195 |
Q |
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| T |
46467963 |
atccaccaccaccgtcgacgtcgttaccatgaaagcagcaggcggaggaacactctcaaaagaacaccaaagcgcaaagaagctatt |
46468049 |
T |
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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 17236478 - 17236359
Alignment:
| Q |
76 |
caaacctttatcttcgtcggagaaacactcgaaatccaccaccaccgtcgacgtcgttaccatgaa---agcagcaggcggaggaacactctcaaaagaa |
172 |
Q |
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||||||||||||||| |||| |||||||| || ||||||||||||||| |||||||||||| | || || |||||||||||| |||||| ||| | |
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| T |
17236478 |
caaacctttatcttcaccggaaaaacactcagaacccaccaccaccgtcgcagtcgttaccatggaagtaggaggaggcggaggaacgctctcagaagta |
17236379 |
T |
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| Q |
173 |
caccaaagcgcaaagaagct |
192 |
Q |
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| T |
17236378 |
caccaaagcgcgaagaagct |
17236359 |
T |
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