View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_low_10 (Length: 404)
Name: NF10327_low_10
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 128 - 403
Target Start/End: Original strand, 51222404 - 51222671
Alignment:
| Q |
128 |
aagctcaaatgaattgtgttatcaacattctttagaaactttgtagaatttcgggacatgaagtcagtcaagaaaaaacgaacattcttttctctaagaa |
227 |
Q |
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| T |
51222404 |
aagctcaaatgaattgtgttatcaacattctttagaaactttgtagaatttcgggacatgaagtcagtcaagaaaaaacgaacattcttttctctaagaa |
51222503 |
T |
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| Q |
228 |
tattgatagaggaaaacgtgataggttgacggcttgacgcaaatttatggatttnnnnnnnctcatgttcttggaagatatcttggagtgcctatggctg |
327 |
Q |
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| T |
51222504 |
tattgatagaggaaaacgtgatagg--------ttgatgcaaatttatggatttaaagaaactcatgttcttggaagatatcttggagtgcctatgactg |
51222595 |
T |
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| Q |
328 |
ggagaatgccaaggagaaatgattaccaatatgtaactcctatatatccaaagaatgtaaaggaaattcatctgtg |
403 |
Q |
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| T |
51222596 |
ggagaatgccaaggagaaatgattaccaatatgtaactcctatatatccaaagaatgtaatggaaattcatctgtg |
51222671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 51222138 - 51222203
Alignment:
| Q |
2 |
tctgtgggtgactgatgttagttaggattctagttaacctgatggaggctagggttcacactaacc |
67 |
Q |
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| T |
51222138 |
tctgtgggtgactgatgttagttaggattctagttaacctgatggaggctagggttcacactaacc |
51222203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 308 - 363
Target Start/End: Original strand, 51220073 - 51220128
Alignment:
| Q |
308 |
tcttggagtgcctatggctgggagaatgccaaggagaaatgattaccaatatgtaa |
363 |
Q |
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| T |
51220073 |
tcttggaatgcctatgactgggagaatgccaaggagaaatgattaccaatatgtaa |
51220128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 51219932 - 51220052
Alignment:
| Q |
128 |
aagctcaaatgaattgtgttatcaacattctttagaaactttgtagaatttcg-ggacatgaagtcagtcaagaaaaaacgaacattcttttctctaaga |
226 |
Q |
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||||||| || |||||||||||| |||||||| |||| |||||| |||||| ||||| | || | ||||||||||| | |||| | || ||||||| |
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| T |
51219932 |
aagctcacataaattgtgttatcgacattcttgagaagttttgtaaaatttcaaggacagcaggt--gccaagaaaaaactagcattatgttttctaaga |
51220029 |
T |
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| Q |
227 |
atattgatagaggaaaacgtgat |
249 |
Q |
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|| |||||||||||||||||||| |
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| T |
51220030 |
atgttgatagaggaaaacgtgat |
51220052 |
T |
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