View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_low_14 (Length: 378)
Name: NF10327_low_14
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 206 - 336
Target Start/End: Complemental strand, 55161344 - 55161214
Alignment:
| Q |
206 |
gaaccatagaaagaagaaacccccatcatgagtatcactagaagtagaagaaggaagaaaaatatatgaatggtagtatggaatgaaataggttgcatca |
305 |
Q |
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| T |
55161344 |
gaaccatagaaagaagaaacccccatcatcagtatcactagaagtagaagaaggaagaaaaatatatgaatggtagtatggaatgaaataggttgcatca |
55161245 |
T |
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| Q |
306 |
tcatccttgggaatttgaaagttacttacta |
336 |
Q |
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| T |
55161244 |
tcatccttgggaatttgaaaggtacttacta |
55161214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 55161514 - 55161386
Alignment:
| Q |
18 |
aatactacaa-ttataagttacaaaacaacaacaacatgaattgaattgaattgaattgaatattaccacctgagtgtaagcagtaaagtcatatagggg |
116 |
Q |
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| T |
55161514 |
aatactacaagttataagttacaaaacaacaacaacatgaattgaattgaattgaat-----attaccacctgagtgtaagcagtaaagtcatatagggg |
55161420 |
T |
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| Q |
117 |
tccatctgcaacaaaacaatcaatcaaatactag |
150 |
Q |
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| T |
55161419 |
tccatctgcaacaaaacaatcaatcaaatactag |
55161386 |
T |
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