View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_low_15 (Length: 374)
Name: NF10327_low_15
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 27 - 358
Target Start/End: Complemental strand, 42152668 - 42152338
Alignment:
| Q |
27 |
ttcagaccctttctggagatttaaaggatctaaatctccttagcttggtatcaaattccaaacattgaaaacccaaaaattgaagaaaaggatggnnnnn |
126 |
Q |
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| T |
42152668 |
ttcagaccctttctggagatttaaaggatctaaatctccttagcttggtatcaaattccaaacattgaaaacccaaaaattgaagaaaaggatg-aaaaa |
42152570 |
T |
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| Q |
127 |
nnntgaagaaactaaattaatcatgcaaaaagatgacatcttattcaacttaattcttaggtgttgaatccacctctgaattatgcctcattgaaggacc |
226 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42152569 |
aaatgaagaaactaaattaatcatgcaaaaagatgacatcttattcaacttaattcttaggtgttgaatccacctctgaattatgcctcattgaaggacc |
42152470 |
T |
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| Q |
227 |
tgaaggtggtattcgcattcctttcgggaagaagttgaaaaccaaacgcgggttatgctttcgccttagatgttctgtgttttcattcatcttcagcttc |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42152469 |
tgaaggtggtattcgcattcctttcgggaagaagttgaaaaccaaacgcgggttatgctttcgccttagatgttctgtgttttcattcatcttcagcttc |
42152370 |
T |
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| Q |
327 |
attgttgtaattcccatccttgtagaagtgca |
358 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42152369 |
attgttgtaattcccatccttgtagaagtgca |
42152338 |
T |
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