View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_low_17 (Length: 362)
Name: NF10327_low_17
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 46454987 - 46454643
Alignment:
| Q |
1 |
taatctgaagtacttatatatatctaacaggaaagcctacaaaccaataatacatcacttcactttacaacaaatatgcctctgatttatgtaaaacaaa |
100 |
Q |
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| T |
46454987 |
taatctgaagtacttatatatatctaacaggaaagcctacaaaccaataatacatcacttcactttacaacaaatatgcctctgatttatgtaaaacaaa |
46454888 |
T |
|
| Q |
101 |
ataatttggatattgtgttgttattggtttacaaagcacacaagatcgctgctataaaataattatatccctatacacttttgacacttattttacgatg |
200 |
Q |
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| T |
46454887 |
ataatttggatattgtgttgttattggtttacaaagcacacaagatctctgctataaaataattatatccctatacacttttgacacttattttacgatg |
46454788 |
T |
|
| Q |
201 |
tattggaaaactaatagcaaagtccatcccatcacctcctttggaaattgaaggatttaattgcataggcaaatacaaatgcaaaaagtatgcagaaacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46454787 |
tattggaaaactaatagcaaagtccatcccatcacctcctttggaaattgaaggatttaattgcataggcaaatacaaatgcaaaaagtatgcagaaacc |
46454688 |
T |
|
| Q |
301 |
agctaccatagtagcagcaacgcacaagaaatcatgcctgtaccc |
345 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46454687 |
agctaccatagtagcagcaacgcacaagaaatcatgcctgtaccc |
46454643 |
T |
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