View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_low_19 (Length: 336)
Name: NF10327_low_19
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 91 - 315
Target Start/End: Complemental strand, 30826239 - 30826020
Alignment:
| Q |
91 |
gcttaatgatttagtctttgttcgttacaacatgaggctcgagaataggtatttttatgtttatttttctttaaccatttatttgtcttgctatatttaa |
190 |
Q |
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| T |
30826239 |
gcttaatgatttagtctttgttcgttacaacatgaggctcgagaataggtatttttatgtttatttttctttaaccatttatttgtcttgttatatttaa |
30826140 |
T |
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| Q |
191 |
atacatgtgcttagatttaatctacatgtgtttaggaaaagtagagtagacatcaaagttatgaccctacaaatgcttaaacacttggtgaccattctga |
290 |
Q |
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| T |
30826139 |
atacatgtgcttagatttaatctacatgtgtttaggaaaag-----tagacatcaaagttatgaccctacaaatgctgaaacacttggtgaccattctga |
30826045 |
T |
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| Q |
291 |
ttgggtattggaggattcaccaccc |
315 |
Q |
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| T |
30826044 |
ttgggtattggaggattcaccaccc |
30826020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 30826963 - 30826870
Alignment:
| Q |
4 |
tgtggaggatgttttagattctggattctggagtaaatctgctgatatagtgaaactcactgaaccactagtccgtgtgttgcgtatgcttaat |
97 |
Q |
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| T |
30826963 |
tgtggaggacgttttagattctggattctggagtaaatctgccgatatagtgaaactcactgaaccactagtccgtgtgttgcgtatggttaat |
30826870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 51600882 - 51600837
Alignment:
| Q |
43 |
tgctgatatagtgaaactcactgaaccactagtccgtgtgttgcgt |
88 |
Q |
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| T |
51600882 |
tgctgacatagtgaaactcacagaaccacttgtacgtgtgttgcgt |
51600837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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