View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_low_2 (Length: 526)
Name: NF10327_low_2
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Complemental strand, 6945969 - 6945472
Alignment:
| Q |
18 |
aaaggaatgcggttggagagagatgggggcttcgttggtgtagagacttgtttgtgtgggaaagggagcttgtgaatgctcttataacaaggggtggtgg |
117 |
Q |
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| T |
6945969 |
aaaggaatgcggttggagagagatgggggcttcgttggtgtagagacttgtttgtgtgggaaagggagcttgtgaatgctcttataacaaggggtggtgg |
6945870 |
T |
|
| Q |
118 |
taagggagggagtggattcgaggtcttggaagccggaggagggatgggtttttaccgtcaagtcttgttatttattgttacaagatagatggcttttaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6945869 |
taagggagggagtggattcgaggtcttggaagccggaggagggatgggtttttaccgtcaagtcttgttatttattgttacaagatagatggcttttaga |
6945770 |
T |
|
| Q |
218 |
cgacgtgtttactttggatgaggaggtggtgtatcaggagctttggaaaagtaaggcaccggctaaggtgttggctttttcgtggactttgttcttggat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6945769 |
cgacgtgtttactttggatgaggaggtggtgtatcaggagctttggaaaagtaaggcaccggctaaggtgttggctttttcgtggactttgttcttggat |
6945670 |
T |
|
| Q |
318 |
agaatcccaacgaaggtgaaccttcacaagagacggttattggggtgtgaagagtctaagcgttgtgtgttttgtggtggtgaggatgaaacggcggtgc |
417 |
Q |
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| T |
6945669 |
agaatcccaacgaaggtgaaccttcacaagagacggttattggggtgtgaagagtctaagcgttgtgtgttttgtggtggtgaggatgaaacggcggtgc |
6945570 |
T |
|
| Q |
418 |
atttattcatccattatgaggtgatagccacggtgtggagtgaggttatgagatggttgggttttaattttttaacgccgcctaatctttttattcat |
515 |
Q |
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| T |
6945569 |
atttattcatccattatgaggtgatagccacggtgtggagtgaggttatgagatggttgggttttaattttttaacgccgcctaatctttttattcat |
6945472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 7898019 - 7898087
Alignment:
| Q |
239 |
ggaggtggtgtatcaggagctttggaaaagtaaggcaccggctaaggtgttggctttttcgtggacttt |
307 |
Q |
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| T |
7898019 |
ggaggtggtgttccagaacctttggaagagtaaggtaccggctaaggtgttggcttttttgtggacttt |
7898087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 291 - 415
Target Start/End: Original strand, 654959 - 655083
Alignment:
| Q |
291 |
gctttttcgtggactttgttcttggatagaatcccaacgaaggtgaaccttcacaagagacggttattggggtgtgaagagtctaagcgttgtgtgtttt |
390 |
Q |
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| T |
654959 |
gctttttcgtggaccttgttccttgataggttaccgactaaggttaatcttgcaaagagacggttagtgggggtggaagtatctaagcggtgtgtgtttt |
655058 |
T |
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| Q |
391 |
gtggtggtgaggatgaaacggcggt |
415 |
Q |
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| T |
655059 |
gtggtggtgatgatgaaacggcggt |
655083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 16663276 - 16663228
Alignment:
| Q |
259 |
tttggaaaagtaaggcaccggctaaggtgttggctttttcgtggacttt |
307 |
Q |
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| T |
16663276 |
tttggaagagtaaagctccggctaaggtggtagctttttcgtggacttt |
16663228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 394
Target Start/End: Original strand, 13855239 - 13855372
Alignment:
| Q |
261 |
tggaaaagtaaggcaccggctaaggtgttggctttttcgtggactttgttcttggatagaatcccaacgaaggtgaaccttcacaagagacggttattg- |
359 |
Q |
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||||| |||||||| ||||| ||||| |||||||||||||||||||| || | ||||| ||||| || | |||||||||| |||||| || || || |
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| T |
13855239 |
tggaagagtaaggcgccggcaaaggtattggctttttcgtggactttatttctagataggatcccgactatggtgaaccttgggaagagaaggctactga |
13855338 |
T |
|
| Q |
360 |
gggtgtgaagagtctaagcgttgtgtgttttgtgg |
394 |
Q |
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||||| ||||| |||||| | |||||||||||||| |
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| T |
13855339 |
gggtg-gaagattctaagaggtgtgtgttttgtgg |
13855372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 393
Target Start/End: Original strand, 15646667 - 15646805
Alignment:
| Q |
255 |
gagctttggaaaagtaaggcaccggctaaggtgttggctttttcgtggactttgttcttggatagaatcccaacgaaggtgaaccttcacaagagacggt |
354 |
Q |
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| T |
15646667 |
gagctttggaaaactagagcaccgacaaaggtgttggctttctcatggacattgttactagataggattccgaccaaggtgaatctcgataagagacggt |
15646766 |
T |
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| Q |
355 |
tattggggtgtgaagagtctaagcgttgtgtgttttgtg |
393 |
Q |
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||||||| ||| || || ||||| ||||||||||||| |
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| T |
15646767 |
tattgggaaatgaggattcaaagcggtgtgtgttttgtg |
15646805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 361
Target Start/End: Original strand, 15622878 - 15622984
Alignment:
| Q |
255 |
gagctttggaaaagtaaggcaccggctaaggtgttggctttttcgtggactttgttcttggatagaatcccaacgaaggtgaaccttcacaagagacggt |
354 |
Q |
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||||||||||||| || |||||| | |||||||||||||| || ||||| ||||| | ||||| || || || |||||||| || | |||||||||| |
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| T |
15622878 |
gagctttggaaaactagagcaccgacaaaggtgttggctttctcatggacattgttactagataggattccgaccaaggtgaatctcgataagagacggt |
15622977 |
T |
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| Q |
355 |
tattggg |
361 |
Q |
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||||||| |
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| T |
15622978 |
tattggg |
15622984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 341
Target Start/End: Original strand, 26490335 - 26490415
Alignment:
| Q |
261 |
tggaaaagtaaggcaccggctaaggtgttggctttttcgtggactttgttcttggatagaatcccaacgaaggtgaacctt |
341 |
Q |
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||||| |||||||| | |||||||| |||| ||||||||||||||| ||| | ||||| || ||||| |||||||||||| |
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| T |
26490335 |
tggaagagtaaggcgctagctaaggttttggttttttcgtggactttattccttgataggattccaacaaaggtgaacctt |
26490415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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