View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10327_low_20 (Length: 334)
Name: NF10327_low_20
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 49842103 - 49842423
Alignment:
| Q |
1 |
catgaagtcagtctcattctccaaatggagtttggtctagtcacgctttgtttacattacatttgacagtgatagatgtattgtcgattttgattgaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
49842103 |
catgaagtcagtctcattctccaaatggagtttggtctagtcacgctttgtttacattacatttgacagtgagagatgtattgtcgattttgattgaaag |
49842202 |
T |
|
| Q |
101 |
taaagaaagaattat----atccatccatctaccaatctaatcttcttcttgtcttgcatttcaaatgttccaattcacatgaattagcacaattggtgc |
196 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49842203 |
taaagaaagaattatatccatccatccatctaccaatctaatcttcttcttgtcttgcatttcaaatgttccaattcacatgaattagcacaattggtgc |
49842302 |
T |
|
| Q |
197 |
acatgcaattatgtgcatatgccaccnnnnnnnnnnnnnnnnctcctaaa----gagttttcattatctaaagtctaaaccaacgattggatacgccagc |
292 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49842303 |
acatgcaattatgtgcatatgccacc-----ttttttcttttctcctaaagagtgagttttcattatctaaagtctaaaccaacgattggatacgccagc |
49842397 |
T |
|
| Q |
293 |
ttatccacctgacacatcatacatat |
318 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
49842398 |
ttatccacctgacacatcatacatat |
49842423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University