View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_low_22 (Length: 331)
Name: NF10327_low_22
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_22 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 7698683 - 7698384
Alignment:
| Q |
19 |
gtgttgaggtgttccaatgccaactgaggtgtagaaaagattggttaatgggtctttttcaatgggtaagatgaattgtgatgaacaagaaaatgagaga |
118 |
Q |
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| T |
7698683 |
gtgttgaggtgttccaatgccaactgaggtgtagaaaagattggttaatgggtctttttcaatgggtaagatgaattgtgatgaacaagaaaatgagaga |
7698584 |
T |
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| Q |
119 |
atggctattgtgaggagggagaaaagagttgcaaaagaagccattatgagtttaatggataaaatgaatgtttaatgcatgactgaagggttccttttta |
218 |
Q |
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| T |
7698583 |
atggctattgtgaggagggagaaaagagttgcaaaagaagccattatgagtttaatggataaaatgaatgtttaatgcatgactgaagggttccttttta |
7698484 |
T |
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| Q |
219 |
tagaaattaatatatgaagacagtgaataatttaatacattcttaatttactagatttgaactgctattataatattcctctttaatcttctttaggttc |
318 |
Q |
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| T |
7698483 |
tagaaattaatatatgaagacagtgaataatttaatacattcttaatttactagatttgaactgctattataatattcctctttaatcttctttaggttc |
7698384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 7710671 - 7710587
Alignment:
| Q |
51 |
agaaaagattggttaatgggtctttttcaatgggtaagatgaa---ttgtgatgaacaagaaaatgagagaatggctattgtgag |
132 |
Q |
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| T |
7710671 |
agaatagattggttattgggtctttttcaactggtgagaagaactgttgtgatgagcaagaaaatgagagaagggctattgtgag |
7710587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 56 - 175
Target Start/End: Complemental strand, 7725566 - 7725438
Alignment:
| Q |
56 |
agattggttaatgggtctttttcaatgggtaagatgaa---ttgtgatgaacaagaaaatgagagaatggctattgtgag-----gag-ggagaaaagag |
146 |
Q |
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| T |
7725566 |
agattggttattgggtctttttcaactggtgagaagaactgttgtgatgagcaagaaaatgagagaagggctactgtgagaattagagaggagaaaagtg |
7725467 |
T |
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| Q |
147 |
ttgcaaaagaagccattatgagtttaatg |
175 |
Q |
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| T |
7725466 |
tagcaaaagaagccattgtgagttcaatg |
7725438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 7732981 - 7732897
Alignment:
| Q |
51 |
agaaaagattggttaatgggtctttttcaatgggtaagatgaa---ttgtgatgaacaagaaaatgagagaatggctattgtgag |
132 |
Q |
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| T |
7732981 |
agaatagattggttattgggtctttttcaactggtgagaagaactgttgtgatgagcaagaaaatgagagaagggctattgtgag |
7732897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 132
Target Start/End: Original strand, 7746929 - 7747008
Alignment:
| Q |
56 |
agattggttaatgggtctttttcaatgggtaagatgaa---ttgtgatgaacaagaaaatgagagaatggctattgtgag |
132 |
Q |
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| T |
7746929 |
agattggttaatgagtctttttcaattggtgagaagaactgttgtgatgagcatgaaaatgagagaaggactattgtgag |
7747008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 7775082 - 7775130
Alignment:
| Q |
29 |
gttccaatgccaactgaggtgtagaaaagattggttaatgggtcttttt |
77 |
Q |
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| T |
7775082 |
gttcctatgccaactgatgtgtagaatagattggttgatgggtcttttt |
7775130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 7767755 - 7767802
Alignment:
| Q |
29 |
gttccaatgccaactgaggtgtagaaaagattggttaatgggtctttt |
76 |
Q |
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| T |
7767755 |
gttcctatgccaactgatgtgtagaatagattggttgatgggtctttt |
7767802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 259
Target Start/End: Original strand, 7747089 - 7747146
Alignment:
| Q |
202 |
tgaagggttcctttttatagaaattaatatatgaagacagtgaataatttaatacatt |
259 |
Q |
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| T |
7747089 |
tgaagggttcctttttatagaaataaatatgtgaagaaaatgtataatctcatacatt |
7747146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 7710435 - 7710383
Alignment:
| Q |
261 |
ttaatttactagatttgaactgctat-tataatattcctctttaatcttcttt |
312 |
Q |
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| T |
7710435 |
ttaattgactatacttgaactggtatatataatattcctctttaatcttcttt |
7710383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 7725406 - 7725370
Alignment:
| Q |
202 |
tgaagggttcctttttatagaaattaatatatgaaga |
238 |
Q |
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| T |
7725406 |
tgaagggttcctttttatagaaatgaatatgtgaaga |
7725370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 11022 - 10971
Alignment:
| Q |
24 |
gaggtgttccaatgccaactgaggtgtagaaaagattggttaatgggtcttt |
75 |
Q |
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| T |
11022 |
gaggtgttcctatgccaactgatgtgtagaaaagattggttgatgggtcttt |
10971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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