View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10327_low_23 (Length: 329)
Name: NF10327_low_23
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 15 - 318
Target Start/End: Complemental strand, 21483676 - 21483373
Alignment:
| Q |
15 |
caaacatcatggctagatcaaacacctctcattgtacctccacaacaattttcacaaccaatggttggagttggcgttggatttgttgctgatccttaca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21483676 |
caaacatcatggctagatcaaacacctctcattgtacctccacaacaattttcacaaccaatggttggagttggagttggatttgttgctgatccttaca |
21483577 |
T |
|
| Q |
115 |
caaatggttctgtttcaaataacattaacccttaccaacctgctgttactaatgaatatcacatgttggaatcaaatcattcatggggtgcttctcaatt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21483576 |
caaatggttctgtttcaaataacattaacccttaccaacctgctgttactaatgaatatcacatgttggaatcaaatcattcatggggtgcttctcaatt |
21483477 |
T |
|
| Q |
215 |
caatgttgcaccaaactacaatcaatcatttgtggaaaataacaacaatgtgctacaacctcatggtatgaattttggaggttatggaaatcaatataat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21483476 |
caatgttgcaccaaactacaatcaatcatttgtggaaaataacaacaatgtgctacaacctcatggtatgaattttggaggttatggaaatcaatataat |
21483377 |
T |
|
| Q |
315 |
tctt |
318 |
Q |
| |
|
|||| |
|
|
| T |
21483376 |
tctt |
21483373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University