View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_low_24 (Length: 313)
Name: NF10327_low_24
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 38320558 - 38320280
Alignment:
| Q |
18 |
cacagatcaacagttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38320558 |
cacagatcaacagttaaagatatcctattaggaatggtagccaaatcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaa |
38320459 |
T |
|
| Q |
118 |
taacatttataggaggcataacagcatttggatttaagaccttcatgaagttactcataccctcgcgctcnnnnnnntcaaagggaaaatcatttgaaag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38320458 |
taacatttataggaggcataacagcatttggatttaagaccttcatgaagttactcataccctcgcgctcaaaaaaatcaaagggaaaatcatttgaaag |
38320359 |
T |
|
| Q |
218 |
gatcatagaagcacaccttttaaccaaccataattgatctatctcgccaatagattccacattttcttgtgatatttct |
296 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38320358 |
gatcatagaagcacaccttttaactaaccataattgatctatctcgccaatagattccacattttcttgtgatatttct |
38320280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 38305732 - 38305518
Alignment:
| Q |
18 |
cacagatcaacagttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaa |
117 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| |||| ||||| ||||||||||||| || |
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|
| T |
38305732 |
cacaaatcaaaagttaaagatatcctattaggaatggtagccaattcttgtttaagcttcagtttctctttcatgtataaatcagagacataagcctcaa |
38305633 |
T |
|
| Q |
118 |
taacatttataggaggcataacagcatttggatttaagaccttcatgaagttactcataccctcgcgctcnnnnnnntcaaagggaaaatcatttgaaag |
217 |
Q |
| |
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|||||| || |||||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
38305632 |
taacatctacaggaggcaaaacaatatttggatttaagaccttcatgaagttcctcatcccctcgcgctcaaaaaactcaaagggaaaatcatttgaaag |
38305533 |
T |
|
| Q |
218 |
gatcatagaagcaca |
232 |
Q |
| |
|
||||||||||||||| |
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|
| T |
38305532 |
gatcatagaagcaca |
38305518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 38316460 - 38316322
Alignment:
| Q |
18 |
cacagatcaacagttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaa |
117 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| |||||||||| ||||||||||| |||||| ||||||||||||||| ||| |||||||||| || |
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|
| T |
38316460 |
cacaaatcaaaagttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaatgcgaaacataagcctcaa |
38316361 |
T |
|
| Q |
118 |
taacatttataggaggcataacagcatttggatttaaga |
156 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||||||| |
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|
| T |
38316360 |
taacatttgtcggaggtataacagcatttggatttaaga |
38316322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 38313051 - 38312910
Alignment:
| Q |
18 |
cacagatcaacagttaaagatatcctatt----aggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagcc |
113 |
Q |
| |
|
|||| ||||| |||||||||||||||||| |||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
38313051 |
cacaaatcaaaagttaaagatatcctatttattaggaatggtagccaattcttgcttaagcttgagtttctgattcgtgtacaaatcggagacataagcc |
38312952 |
T |
|
| Q |
114 |
ttaataacatttataggaggcataacagcatttggatttaag |
155 |
Q |
| |
|
| || ||||||| ||||||||||||| |||||||||||||| |
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|
| T |
38312951 |
tcaagaacatttgaaggaggcataacaacatttggatttaag |
38312910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 38325305 - 38325169
Alignment:
| Q |
18 |
cacagatcaacagttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaa |
117 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||||| | ||||||||||| || |
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|
| T |
38325305 |
cacaaatcaaaagttaaagataccctattaggaatggtagccaattgttgtttaagcttagatttctctttcatgtacaaatgagtgacataagcctcaa |
38325206 |
T |
|
| Q |
118 |
taacatttataggaggcataacagcatttggatttaa |
154 |
Q |
| |
|
|||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
38325205 |
taacatttgtaggaggtataacagcatttcgatttaa |
38325169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 38299813 - 38299730
Alignment:
| Q |
18 |
cacagatcaacagttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatcc |
101 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||| | ||||||| ||||||||| ||| |||||||||||| |
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|
| T |
38299813 |
cacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaatcc |
38299730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 38308453 - 38308385
Alignment:
| Q |
30 |
gttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaa |
98 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| || ||||| ||||| ||||| ||| |||||||||| |
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|
| T |
38308453 |
gttaaagatatcttataaggaatggtagccagttgttgtttgagcttatgtttctcttccgtgtacaaa |
38308385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 38850885 - 38851023
Alignment:
| Q |
18 |
cacagatcaacagttaaagatatcctattaggaatggtagccaattcctgtttaagcttgagtttcgctttcgtgtacaaatccgagacataagccttaa |
117 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||| || || ||||| | | |
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|
| T |
38850885 |
cacaaatcaaaagataaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaatgtgaaacgtaagcttcga |
38850984 |
T |
|
| Q |
118 |
taacatttataggaggcataacagcatttggatttaaga |
156 |
Q |
| |
|
|||||||| ||||||| ||| | |||||||||||||| |
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|
| T |
38850985 |
taacatttctaggaggtataggaatatttggatttaaga |
38851023 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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