View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_low_25 (Length: 293)
Name: NF10327_low_25
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_25 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 30826984 - 30827262
Alignment:
| Q |
1 |
tctggcatatgctgaggttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagca |
100 |
Q |
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| T |
30826984 |
tctggcatatgctgaggttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagca |
30827083 |
T |
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| Q |
101 |
aaccgagttgttgcaggacgaaggatttctcttccacctgtatgctttctcatcaaatacaaggcataacaaatgattataaagatatttggtaatacta |
200 |
Q |
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| T |
30827084 |
aaccgagttggtgcaggacgaa-------------acctgtatgctttctcatcaaatacaaggcataacaa-tgattataaagatatttagtaatacta |
30827169 |
T |
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| Q |
201 |
gcagcttgtgacacaactacttcaacttcttccaactttgattttgcacttgatcacaagatctcatattgatctccttgagttgtgtgcatt |
293 |
Q |
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| T |
30827170 |
gcagcttgtgacacaactacttcaacttcttccaactttgattttgcacttgatcacaagatctcatattgatctccttgagttgtgtgcatt |
30827262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 21291422 - 21291541
Alignment:
| Q |
17 |
gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag |
116 |
Q |
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| T |
21291422 |
gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattagtggcaaagcgagttggagcag |
21291521 |
T |
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| Q |
117 |
gacgaaggatttctcttcca |
136 |
Q |
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| T |
21291522 |
gacgaagtatctctcttcca |
21291541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 3754327 - 3754446
Alignment:
| Q |
17 |
gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag |
116 |
Q |
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| T |
3754327 |
gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattagtggcaaagcgagttggagcag |
3754426 |
T |
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| Q |
117 |
gacgaaggatttctcttcca |
136 |
Q |
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| T |
3754427 |
gacgaagtatctctcttcca |
3754446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 14637222 - 14637341
Alignment:
| Q |
17 |
gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag |
116 |
Q |
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| T |
14637222 |
gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattagtggcaaagcgagttggagcag |
14637321 |
T |
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| Q |
117 |
gacgaaggatttctcttcca |
136 |
Q |
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| T |
14637322 |
gacgaagtatctctcttcca |
14637341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 7649897 - 7650016
Alignment:
| Q |
17 |
gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag |
116 |
Q |
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| T |
7649897 |
gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattagtggcaaagcgagttggagcag |
7649996 |
T |
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| Q |
117 |
gacgaaggatttctcttcca |
136 |
Q |
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| T |
7649997 |
gacgaagtatctctcttcca |
7650016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 11994072 - 11993954
Alignment:
| Q |
18 |
ttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcagg |
117 |
Q |
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| T |
11994072 |
ttgtccactcttgagatgttaccatggctctaggtgcatttttctgagacaaaatactctacaaagcaatgaaattagtggcaaagcgagttggagcaag |
11993973 |
T |
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| Q |
118 |
acgaaggatttctcttcca |
136 |
Q |
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||||| |||| ||||||| |
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| T |
11993972 |
acgaaatatttatcttcca |
11993954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 195
Target Start/End: Original strand, 51600958 - 51601135
Alignment:
| Q |
17 |
gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag |
116 |
Q |
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||||||||||| | ||||||||||||| |||| | ||| || |||| |||||||| |||||||||||||||||||| ||||| ||||||| |||| |
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| T |
51600958 |
gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattagtggcaaagcgagttggagcag |
51601057 |
T |
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| Q |
117 |
gacgaaggatttctcttccacctgtatgctttctcatcaaatacaaggcataacaaatgattataaagatatttggtaa |
195 |
Q |
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||| ||| || ||||||||| ||| || |||||||||||||| | ||||| |||||||||| | ||| ||||||| |
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| T |
51601058 |
gacaaagtatctctcttccatgagtaaatttcctcatcaaatacaatggataac-aatgattatatacatacttggtaa |
51601135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 29027144 - 29027263
Alignment:
| Q |
17 |
gttgtccattcattagatgttaccatgcctcttgaggaattcttttgagctaaaatactttgcaaagcaatgaaattagtagcaaaccgagttgttgcag |
116 |
Q |
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||||||||||| | ||||||||||||| |||| | ||| || |||| |||||||| |||||||||||||||||| | ||||| ||||||| |||| |
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| T |
29027144 |
gttgtccattcttgagatgttaccatggctctaagtgcatttttctgagacaaaatactctgcaaagcaatgaaattactggcaaagcgagttggagcag |
29027243 |
T |
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| Q |
117 |
gacgaaggatttctcttcca |
136 |
Q |
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||||||| || ||||||||| |
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| T |
29027244 |
gacgaagtatctctcttcca |
29027263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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