View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_low_28 (Length: 267)
Name: NF10327_low_28
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 52699863 - 52700113
Alignment:
| Q |
1 |
aagacgagacgggaacactacccaggagagaacagcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagtttttacctatg |
100 |
Q |
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| T |
52699863 |
aagacgagacgggaacactacccaggagagaacagcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagtttttacctatg |
52699962 |
T |
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| Q |
101 |
tgggacagttggagtttttctatgatgaggcgacggacgggacaaaaagtattagtagtgcagtgtttttgtctgaggttggaatcggaagttggttgag |
200 |
Q |
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| T |
52699963 |
tgggacagttggagtttttctatgatgaggcgacggacgggacaaaaagtattagtagtgcagtgtttttgtctgaggttggaatcggaagttggttgag |
52700062 |
T |
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| Q |
201 |
tagtgctttggtgaagactgttaccgctgcgaccggaggacaagataaagg |
251 |
Q |
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| T |
52700063 |
tagtgctttggtgaagactgttaccgctacgaccggaggacaagataaagg |
52700113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 34 - 217
Target Start/End: Original strand, 52714173 - 52714356
Alignment:
| Q |
34 |
agcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagtttttacctatgtgggacagttggagtttttctatgatgaggcga |
133 |
Q |
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| T |
52714173 |
agcatgagtgtgttttggttgttacctcaattctttctaattggtactgctgaagtttttacctatgtgggacagttagaatttttttacgatgaggcaa |
52714272 |
T |
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| Q |
134 |
cggacgggacaaaaagtattagtagtgcagtgtttttgtctgaggttggaatcggaagttggttgagtagtgctttggtgaaga |
217 |
Q |
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| T |
52714273 |
cggatgggacaaaaagtattagtagtgcaatgtttttgtctaagattggaattggaagttggttaagtactgctttggtgaaga |
52714356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 34 - 217
Target Start/End: Original strand, 52723195 - 52723378
Alignment:
| Q |
34 |
agcatgagtgtgttttggttgttacctcaattctttctaatgggtagtgctgaagtttttacctatgtgggacagttggagtttttctatgatgaggcga |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||| || |||||||| | |
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| T |
52723195 |
agcatgagtgtgttttggttgttacctcaattctttctaattggtactgctgaagtttttacctatgtgggacagttagaatttttttacgatgaggcaa |
52723294 |
T |
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| Q |
134 |
cggacgggacaaaaagtattagtagtgcagtgtttttgtctgaggttggaatcggaagttggttgagtagtgctttggtgaaga |
217 |
Q |
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| T |
52723295 |
cagatgggacaaaaagtattagtagtgcaatgtttttgtctctgattggaattggaagttggttaagtactgctttggtgaaga |
52723378 |
T |
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