View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_low_29 (Length: 263)
Name: NF10327_low_29
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 7161640 - 7161403
Alignment:
| Q |
20 |
tcctggagattcacttcaccaacagcctcttcccagtcttacgtttgacatcgtggctgaaattctttccaggcttccagtcaaatccctcatgcaactc |
119 |
Q |
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| T |
7161640 |
tcctggagattcacttcaccaacagcctcttcccagtcttacgtttgacatcgtggctgaaattctttccaggcttccagtcaaatccctcatgcaactc |
7161541 |
T |
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| Q |
120 |
aaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgccaagaaccactttcgcgtttcaaccacgcgccaccatcttgtctcagata |
219 |
Q |
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| T |
7161540 |
aaatcggtctgcaaatcctggaaatatcttatttcagattcaaatttcgccaagaaccactttcgcgtttcaaccacgcgccaccatcttgtctcagata |
7161441 |
T |
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| Q |
220 |
aaaccaaaccctcactcaagtattaccctctctgctcc |
257 |
Q |
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| T |
7161440 |
aaaccaaaccctcactcaattattaccctctctcctcc |
7161403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 72 - 209
Target Start/End: Complemental strand, 7169530 - 7169393
Alignment:
| Q |
72 |
gtggctgaaattctttccaggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgcca |
171 |
Q |
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| T |
7169530 |
gtggcggaaattctctccaggcttccagtcaagtttctcatgcaactccaatccgtctgtaagtcctggaaatctcttatctccgattcaaaattcgcta |
7169431 |
T |
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| Q |
172 |
agaaccactttcgcgtttcaaccacgcgccaccatctt |
209 |
Q |
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| T |
7169430 |
agaatcaccttcgcttgtcaaccacgctccaccgtctt |
7169393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 197
Target Start/End: Complemental strand, 7175163 - 7175055
Alignment:
| Q |
89 |
caggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgccaagaaccactttcgcgtt |
188 |
Q |
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| T |
7175163 |
caggcttccagtcaaatccctcgcacagtttaaatctgtctccaaatcctggaaatctctcatctcagattcaaatttcaccaagaagaaccttcgcgtg |
7175064 |
T |
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| Q |
189 |
tcaaccacg |
197 |
Q |
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| T |
7175063 |
tcaaccacg |
7175055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 213
Target Start/End: Original strand, 11236913 - 11237045
Alignment:
| Q |
81 |
attctttccaggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgccaagaaccact |
180 |
Q |
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| T |
11236913 |
attctctccaggctgccagtcaaatacctcatgcaactccaatccgtctgtaagtcctggaaatctctcatctccgatcccaaattcatcaaaaaacacc |
11237012 |
T |
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| Q |
181 |
ttcgcgtttcaaccacgcgccaccatcttgtct |
213 |
Q |
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| T |
11237013 |
ttcacgtgtccaccacgcgcctccatctcgtct |
11237045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 24722586 - 24722641
Alignment:
| Q |
90 |
aggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatc |
145 |
Q |
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| T |
24722586 |
aggcttccggtcaagtccctcatgcaattcaaatgtgtctgcaagtcctggaaatc |
24722641 |
T |
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