View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_low_3 (Length: 495)
Name: NF10327_low_3
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 4175265 - 4175465
Alignment:
| Q |
19 |
atttggacttggttcaatcttgaccaaccgtgaagaatattgaatggtatccgtaggcagttgtccagccaaggtttccaaaagtaccctcctctccact |
118 |
Q |
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| T |
4175265 |
atttggacttggttcaatcttgaccaaccgtgaagaatattgaatggtatccgtaggcagttgtccagccaaggtttccaaaagtaccctcctctccact |
4175364 |
T |
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| Q |
119 |
gcacgcaactcttggctgcacaatagcccatacatttcataaatatttattgtaacaatgacaaaaaccaataatgataaatatctaaaataagatacta |
218 |
Q |
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| T |
4175365 |
gcacgcaactcttggctgcacaatagcccatacatttcataaatatttgttgtaacaatgacaaaaaccaataatgataaatatctaaaataagatacta |
4175464 |
T |
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| Q |
219 |
c |
219 |
Q |
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| T |
4175465 |
c |
4175465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 4171275 - 4171423
Alignment:
| Q |
19 |
atttggacttggttcaatcttgaccaaccgtgaagaatattgaatggtatccgtaggcagttgtccagccaaggtttccaaaagtaccctcctctccact |
118 |
Q |
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| T |
4171275 |
atttggacttggttcaatcttgaccaaccgtgaagaatattgaatgctatcaggaggtaactgagcagccaaagtttccaaaagtactctcctctccact |
4171374 |
T |
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| Q |
119 |
gcacgcaactcttggctgcacaatagccc--atacatttcataaatatt |
165 |
Q |
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| T |
4171375 |
gcacgcacctcttggctgcacaataccccttatgcatttcataaatatt |
4171423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 237 - 329
Target Start/End: Original strand, 4175751 - 4175843
Alignment:
| Q |
237 |
ttctatgaaattcataagcaatgtatgttgttagggactattctattgttagaaagagagtgccgataacattcttcttggtctcaattccta |
329 |
Q |
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| T |
4175751 |
ttctttgaaattcataagcaatgtatgttgttagggactattctattgttagaaagagagtgtcgataacactcttcttagtctcaattccta |
4175843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 330 - 374
Target Start/End: Original strand, 40948354 - 40948398
Alignment:
| Q |
330 |
gggaatggattgtctcctgtataaatgcctccagttttctcctgt |
374 |
Q |
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| T |
40948354 |
gggaatggattttctccggtgtaaatgcctccagttttctcctgt |
40948398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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