View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10327_low_33 (Length: 252)
Name: NF10327_low_33
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_33 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 9533206 - 9533442
Alignment:
| Q |
16 |
gaagtacattgtgtggttgatnnnnnnnnccatgtagcatctaacaagaacatacaataaaacaattcaccacatacacttgcatccacaaacaataact |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9533206 |
gaagtacattgtgtggttgataaaaaaaaccatgtagcatctaataagaacatacaataaaacaattcaccacatacacttgcatccaaaaacaataact |
9533305 |
T |
|
| Q |
116 |
cataacaaataaatcattaaaacacatgagaatcaaattgcaatagaatcaaacaaaattaccattacggtgcgatcgattcctcgaaaccaaatggttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9533306 |
cataacaaataaatcattaaaacacatgagaatcaaattgcaatagaatcaaacaaaattaccattacggtgtgatcgattcctcgaaaccaaatggttg |
9533405 |
T |
|
| Q |
216 |
agccagtcaacaacctccctccttgccctccatttat |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9533406 |
agccagtcaacaacctccctccttgccctccatttat |
9533442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University