View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_low_35 (Length: 243)
Name: NF10327_low_35
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 34706227 - 34706440
Alignment:
| Q |
20 |
gttggcgtccactgtcaactaaattcttaacatatatagcatgatgttttgggaaattgaggttaatataagttcaggttttatattctaaaatgatata |
119 |
Q |
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| T |
34706227 |
gttggcgtccactgtcaactaaattcttaacatatatagcatgatgttttgggaaattgaggttaatataagttcaggttttatattctaaaatgatata |
34706326 |
T |
|
| Q |
120 |
taaatggttcaaatgtaagctgaatatatttcaatttgtaatttcattttgattgaaaaagtaaattgagggtataagtaaattctcaagcatttgaaca |
219 |
Q |
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| T |
34706327 |
taaatggttcaaatgtaagctgaatatatttcaatttgtaatttcattttgattgaaaaagtaaattgagggtataagtaaattctcaagcatttgaaca |
34706426 |
T |
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| Q |
220 |
ctcccttcatctca |
233 |
Q |
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|||||||| ||||| |
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| T |
34706427 |
ctcccttcgtctca |
34706440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 4358356 - 4358570
Alignment:
| Q |
20 |
gttggcgtccactgtcaactaaattcttaacatatatagcatgatgttttgggaaattgaggttaatataagttcaggttttatattctaaaatgatata |
119 |
Q |
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| T |
4358356 |
gttggcgtcccctgtcagctcaattcttcacatatatagcatgatgttttggaaaattgaggttaatataagttcaagttttatattctaaaatgatata |
4358455 |
T |
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| Q |
120 |
taaatggttcaaatgtaagctgaatatatttcaatttgtaatttcattttgattgaaaaagtaaattgagggtataagtaaattctcaagcatttgaa-c |
218 |
Q |
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| T |
4358456 |
ttaatggttcaaatgtaagctgaatatacttctatttgaaatttcattttgattgaaaaagtaaattgagggtataagtaaattctcaagcatttgaagc |
4358555 |
T |
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| Q |
219 |
actcccttcatctca |
233 |
Q |
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| T |
4358556 |
actcccttcgtctca |
4358570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 108 - 217
Target Start/End: Original strand, 45033154 - 45033267
Alignment:
| Q |
108 |
taaaatgatatataaatggttcaaatgtaagctgaatatatttcaatttgtaatttcattttgattgaaaaagtaaatt-ga---gggtataagtaaatt |
203 |
Q |
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|||| ||||||||| |||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
45033154 |
taaattgatatatacatggttcaaatgtaagctaaatatgtttctgtttgtaatttcattttgattgaaaaagtaaattcgattttggtataagtaaatt |
45033253 |
T |
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| Q |
204 |
ctcaagcatttgaa |
217 |
Q |
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| T |
45033254 |
ctcaagcatttgaa |
45033267 |
T |
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