View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_low_36 (Length: 240)
Name: NF10327_low_36
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 25997516 - 25997299
Alignment:
| Q |
1 |
gttgtgaaagtaatcttggattgcaagaaagacatatggaacagccaagaactgtttgagctggttgaagaatattttgaaaacagtttgcagacattgg |
100 |
Q |
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| T |
25997516 |
gttgtgaaagtaatcttggattgcaagaaagacatatggaacagccaagatctgtttgagctggttgaagaatattttgaaaacagtttgcaaacattgg |
25997417 |
T |
|
| Q |
101 |
atttctgcactgcattggagaagtgcttgaaaagagctagggatagccaattgcttattcttgttgcgattcaacggttcgaggaagaatctgaatcagg |
200 |
Q |
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| T |
25997416 |
atttctgcactgcattggagaagtgcttgaaaagagctagggatagccaattgcttattcttgttgcgattcaacggttcgaggaagaatctgaatcagg |
25997317 |
T |
|
| Q |
201 |
agacaaatgctatgcaag |
218 |
Q |
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|||||||||||||||||| |
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| T |
25997316 |
agacaaatgctatgcaag |
25997299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 12558463 - 12558305
Alignment:
| Q |
1 |
gttgtgaaagtaatcttggattgcaagaaagacatatggaacagccaagaactgtttgagctggttgaagaatattttgaaaacagtttgcagacattgg |
100 |
Q |
| |
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|||||||| |||||||| || || |||||||| |||||||| || ||||||||||||||||| ||||| || || ||||| || || ||| |||| | | |
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| T |
12558463 |
gttgtgaaggtaatcttagactgtaagaaagatatatggaagagtcaagaactgtttgagcttgttgaggagtactttgataatagcttgaagactctag |
12558364 |
T |
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| Q |
101 |
atttctgcactgcattggagaagtgcttgaaaagagctagggatagccaattgcttatt |
159 |
Q |
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||||||||| ||| || |||||||| |||| ||||| |||||||| |||||||||||| |
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| T |
12558363 |
atttctgcaatgctttagagaagtgtctgaagagagccagggatagtcaattgcttatt |
12558305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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