View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_low_39 (Length: 231)
Name: NF10327_low_39
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 11685404 - 11685201
Alignment:
| Q |
14 |
cagagattaatgtctcgaatcgtgttctccgtcgtttccgtaaacatatcaacaactttctacgtgtttcatttgttgatgaggagttggataaactgta |
113 |
Q |
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||||||||||||| || |||||||||||||||||||| | |||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
11685404 |
cagagattaatgtatctaatcgtgttctccgtcgttttcataaacatatcgataactttctacgtgtttcttttgttgatgaggggttggataaactgta |
11685305 |
T |
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| Q |
114 |
ttcagcagatttatcttctcgcatttctgagagtggtagaactgagatatactatagaattctttccataattaaaaatggcatagttattggtaataag |
213 |
Q |
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|||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||||||||| ||| ||||||||||| ||||||| |||| |
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| T |
11685304 |
ttcagcagatttatcttcacacatttctgagagtgggcgaactaagatatactatagaattctttccatccttagaaatggcatagatattggtggtaag |
11685205 |
T |
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| Q |
214 |
aagt |
217 |
Q |
| |
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|||| |
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| T |
11685204 |
aagt |
11685201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 11689416 - 11689213
Alignment:
| Q |
14 |
cagagattaatgtctcgaatcgtgttctccgtcgtttccgtaaacatatcaacaactttctacgtgtttcatttgttgatgaggagttggataaactgta |
113 |
Q |
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||||||||||||| || |||||||||||||||||||| | |||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
11689416 |
cagagattaatgtatctaatcgtgttctccgtcgttttcataaacatatcgataactttctacgtgtttcttttgttgatgaggggttggataaactgta |
11689317 |
T |
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| Q |
114 |
ttcagcagatttatcttctcgcatttctgagagtggtagaactgagatatactatagaattctttccataattaaaaatggcatagttattggtaataag |
213 |
Q |
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|||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||||||||| ||| ||||||||||| ||||||| |||| |
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| T |
11689316 |
ttcagcagatttatcttcacacatttctgagagtgggcgaactaagatatactatagaattctttccatccttagaaatggcatagatattggtggtaag |
11689217 |
T |
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| Q |
214 |
aagt |
217 |
Q |
| |
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|||| |
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| T |
11689216 |
aagt |
11689213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 11628382 - 11628585
Alignment:
| Q |
14 |
cagagattaatgtctcgaatcgtgttctccgtcgtttccgtaaacatatcaacaactttctacgtgtttcatttgttgatgaggagttggataaactgta |
113 |
Q |
| |
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|||||||||||||||| ||||||||||| ||| | | |||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11628382 |
cagagattaatgtctcaaatcgtgttctgcgtaaatacaaaaaacatatggataactttctacgtgtttcgtttgttgatgaggagttggataaactgta |
11628481 |
T |
|
| Q |
114 |
ttcagcagatttatcttctcgcatttctgagagtggtagaactgagatatactatagaattctttccataattaaaaatggcatagttattggtaataag |
213 |
Q |
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|||| ||||||||||||| || ||||| | | |||| |||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
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| T |
11628482 |
ttcatcagatttatcttcacgtatttccgtgggtggaagaactgatatatactatagaattctttccatccttagaaatggcatagttattggtgataag |
11628581 |
T |
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| Q |
214 |
aagt |
217 |
Q |
| |
|
|||| |
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|
| T |
11628582 |
aagt |
11628585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 11637142 - 11637335
Alignment:
| Q |
14 |
cagagattaatgtctcgaatcgtgttctccgtcgtttccgtaaacatatcaacaactttctacgtgtttcatttgttgatgaggagttggataaactgta |
113 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||| ||||| | ||||||| | || |||||||||||||||||||| || |||||||||||||| |||| |
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| T |
11637142 |
cagagattaatgtctcaaatcgggttctccgtcatttccatcaacatattgataattttctacgtgtttcatttgtcgacgaggagttggataatatgta |
11637241 |
T |
|
| Q |
114 |
ttcagcagatttatcttctcgcatttctgagagtggtagaactgagatatactatagaattctttccataattaaaaatggcatagttattggt |
207 |
Q |
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||||| ||||||||||| || |||||||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| |
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| T |
11637242 |
ctcagccgatttatcttcacgtatttctgagaatgggagaactgagatatactatagaattctttccatccttagaaatggcatagatattggt |
11637335 |
T |
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