View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_low_6 (Length: 461)
Name: NF10327_low_6
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 30901761 - 30902195
Alignment:
| Q |
18 |
cggccttggggatgtgattgaccgaaacattccatctgaagtcgcaatagaaggttgtatagctaaaaacgttgcgtgtggttggtggcacactcttctt |
117 |
Q |
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| T |
30901761 |
cggccttggggatgtgattgaccgaaacattccatctgaagtcgcaatagaaggttgtatagctaaaaacgttgcatgtggttggtggcacactcttctt |
30901860 |
T |
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| Q |
118 |
ttggccgagtcaccgacttgatgtcatggcttcctctacccaattttgttagctagatcttcaatttctttggtaaaaagggtaaatcactaagttatat |
217 |
Q |
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| T |
30901861 |
ttggccgagtcaccgacttgatgtcatggcttcctcgacccaattttgttagctagatcttcaatttctttggtaaaaagggtaaatcactaagttatat |
30901960 |
T |
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| Q |
218 |
gtatgtgtacatacatacagtagtggaataaatatgcatataagctttgtattctttcatggtgtaaattaccatgactgtctctagctattaacaacat |
317 |
Q |
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| T |
30901961 |
gtatgtg----tacatacagtagtggaataaatatgcatataagctttgtattctttcatggtgtaaattaccatgactggctctagctattaacaacat |
30902056 |
T |
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| Q |
318 |
ggatagtaatttctggtatgtgggaagggaattttgggtccttttcatctatgtaacattatatttca------------aagtttataattaattagat |
405 |
Q |
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| T |
30902057 |
ggatagtaatttctggtatgtgggaagggaattttgggtccttttcatctatgtaacattatatttcaaagtgtatatgtaagtttataattaattagat |
30902156 |
T |
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| Q |
406 |
accttgtttgtgagttggtatactgagtcctaacatgaa |
444 |
Q |
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| T |
30902157 |
accttgtttgtaagttggtatactgagtcctaacatgaa |
30902195 |
T |
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