View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10327_low_8 (Length: 425)
Name: NF10327_low_8
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 7161407 - 7161000
Alignment:
| Q |
1 |
cctccgttttcacagaaatcacccctaccaccactcccttgcagctacagttccctctaaacaatcaaagttgggatcacttcattggttcatgccgcgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7161407 |
cctccgttttcacagaaatcacccctaccaccactcccttgcagctacagttccctctaaacgatcaaagttgggatcgcttcattggttcatgccgcgg |
7161308 |
T |
|
| Q |
101 |
catcctctgtttcagtctcggtaaagctccccctcttgtgtggaatccttccattcataaatttactaaattgccctctttgggctatccagaacgagag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7161307 |
catcctctgtttcagtctcggtaaagctccccctcttgtgtggaatccttccattcagaaatttactaaattgccctctttgggctatacagaacgagag |
7161208 |
T |
|
| Q |
201 |
gggctttgcagactgtatggctttggctatgatcatgtaagtgacacttacaaggttgttgttgttgattggtatagtgatgacggttctcattatgggc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161207 |
gggctttgcagactgtatggctttggctatgatcatgtaagtgacacttacaaggttgttgttgttgattggtatagtgatgacggttctcattatgggc |
7161108 |
T |
|
| Q |
301 |
ttgacaaaaatcaaactatgcttcatactttgggtactaactcttggagaaggattcagaattttccttataccccttttggtgcggatggttcaggaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7161107 |
ttgacaaaaatcaaactatgcttcatactttgggtactaactcttggagaaggattcagaattttccttataccccttttggtgcggatggttcaggaac |
7161008 |
T |
|
| Q |
401 |
agttgtct |
408 |
Q |
| |
|
|||||||| |
|
|
| T |
7161007 |
agttgtct |
7161000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 271
Target Start/End: Original strand, 11237232 - 11237370
Alignment:
| Q |
133 |
ctcttgtgtggaatccttccattcataaatttactaaattgccctctttgggctatccagaacgagaggggctttgcagactgtatggctttggctatga |
232 |
Q |
| |
|
||||| ||||||| ||||||||| | |||||||| |||| || ||||||| ||||| ||||||| ||| || || | | ||||| ||||||||||| |
|
|
| T |
11237232 |
ctcttttgtggaacccttccattaagaaatttacgaaatcaccatctttggataatccaaaacgagatgggagttacacaatttatggttttggctatga |
11237331 |
T |
|
| Q |
233 |
tcatgtaagtgacacttacaaggttgttgttgttgattg |
271 |
Q |
| |
|
|||||| | ||||| |||||||||||||| |||| |||| |
|
|
| T |
11237332 |
tcatgtcaatgacatttacaaggttgttgctgtttattg |
11237370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University