View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10327_low_9 (Length: 424)
Name: NF10327_low_9
Description: NF10327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10327_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 41830548 - 41830147
Alignment:
| Q |
18 |
tgatggatcatagtggatacttcaacaatacagttactacaatgccatgcttttcgtcacaaaatcatgaagttgaaattaaaggttcttatttagaaaa |
117 |
Q |
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| T |
41830548 |
tgatggatcatagtggatacttcaacaatacagttactacaatgccatgcttttcgtcacaaaatcacgaagttgaaattaaaggttcttatttagaaaa |
41830449 |
T |
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| Q |
118 |
tggtgtgtttgggagtgtaaatattggagtagaaggggatatggagaataagtgcaacatagaaactaaccctaaccattctgattattattttgatgac |
217 |
Q |
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| T |
41830448 |
tggtgtgtttgggagtgtaaatattggagtagaaggggatatggagaataagtgcaacatagaaactaaccctaaccattctgattattattttgatgac |
41830349 |
T |
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| Q |
218 |
ataaagataaacaatatgcttagtaactgcaatattattgaaagcaataataatgaaattgaaagtaggggt---gtagtggagaatttatttcaagaac |
314 |
Q |
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| T |
41830348 |
ataaagataaacaatatgcttagtaactgcaatattattgaaagcaataataataaaattgaaagtaggggtgaagtagtggagaatttatttcaagaac |
41830249 |
T |
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| Q |
315 |
aattcaacttgggagaatgggattttgaggagttgatgaaagatgtttcctcctttttattttcttgatttttcattctgatccaataatatctgtgctc |
414 |
Q |
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| T |
41830248 |
aattcaacttgggagaatgggattttgaggagttgatgaaagatgtttcctcctttttattttcttgatttttcattctgatccaataatatttgtgttc |
41830149 |
T |
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| Q |
415 |
ct |
416 |
Q |
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| T |
41830148 |
ct |
41830147 |
T |
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